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PMID: 2468130 Published · ppublish English Comparative Study Journal Article Research Support, U.S. Gov't, Non-P.H.S. Research Support, U.S. Gov't, P.H.S.

Phylogenetic evidence for tertiary interactions in 16S-like ribosomal RNA.

Nucleic acids research ·Vol. 17 ·No. 6 ·1989-03-25 ·Pages 2215-21

Haselman T, Camp DG, Fox GE

Abstract

Major efforts are underway to elucidate the spatial distribution of ribosomal RNAs (rRNAs) in the ribosome. An especially informative approach is the identification of likely base-base tertiary interactions within the RNA by phylogenetic comparison. Herein evidence is presented for three heretofore unrecognized candidate tertiary interactions, G506/C525, C779/G803 and A994/U1380 (1) in 16S-like rRNAs. This brings to eight the number of such interactions that are strongly supported by phylogenetic evidence. The three newly identified interactions further define the folding within domains II and III of 16S-like rRNA. No interactions have yet been found that would serve to orient the domains relative to one another.

MeSH Terms
Animals Base Sequence Chlamydomonas/genetics Crithidia/genetics Drosophila/genetics Macromolecular Substances Nucleic Acid Conformation Paramecium/genetics Phylogeny RNA RNA, Mitochondrial RNA, Ribosomal RNA, Ribosomal, 16S Species Specificity Trypanosoma brucei brucei/genetics
Chemicals
Macromolecular Substances RNA, Mitochondrial RNA, Ribosomal RNA, Ribosomal, 16S RNA
Authors & Affiliations
3 authors, click to expand affiliations / ORCID
Haselman T
Department of Biochemical and Biophysical Sciences, University of Houston, TX 77204-5500.
Camp D G
Fox G E
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Article Info
Journal
Nucleic acids research
Abbr.
Nucleic Acids Res
ISSN
0305-1048
DOI
10.1093/nar/17.6.2215
Published
1989-03-25
Pages
2215-21
Language
English
Region
England
NLM ID
0411011
PMCID
PMC317591
Subset
IM
Grants
NIGMS NIH HHS · GM-37655 · United States
External Links
PubMed source DOI: 10.1093/nar/17.6.2215 PMC Full Text View journal details
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