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PMID: 2450588 Published · ppublish English Journal Article

Macromolecular crowding extends the range of conditions under which DNA polymerase is functional.

Biochimica et biophysica acta ·Vol. 949 ·No. 3 ·1988-03-31 ·Pages 297-304

Zimmerman SB, Trach SO

Abstract

The nick-translation reaction of E. coli DNA polymerase I (Pol I) was used as a model system to demonstrate the ability of macromolecular crowding to alter the response of an enzyme to a number of basic parameters, such as pH, temperature or inhibitors. In the presence of high concentrations of non-specific polymers, nick translation occurred under a variety of otherwise strongly inhibitory conditions. The conditions tested included a range of pH values or temperatures or inhibitory concentrations of urea, formamide or ethidium bromide. These crowding effects are accentuated at higher ionic strengths, suggesting their origin in increased binding between the polymerase and its DNA template-primer under crowded conditions. Kinetic measurements were consistent with such a mechanism.

MeSH Terms
DNA/biosynthesis DNA Polymerase I/metabolism Dextrans Escherichia coli/enzymology Ethidium/pharmacology Formamides/pharmacology Hydrogen-Ion Concentration Kinetics Macromolecular Substances Polyethylene Glycols Potassium Chloride/pharmacology Temperature Templates, Genetic Urea/pharmacology
Chemicals
Dextrans Formamides Macromolecular Substances Polyethylene Glycols formamide Potassium Chloride Urea DNA DNA Polymerase I Ethidium
Authors & Affiliations
2 authors, click to expand affiliations / ORCID
Zimmerman S B
Laboratory of Molecular Biology, National Institutes of Diabetes and Digestive and Kidney Diseases, Bethesda, MD 20892.
Trach S O
Article Info
Journal
Biochimica et biophysica acta
Abbr.
Biochim Biophys Acta
ISSN
0006-3002
Published
1988-03-31
Pages
297-304
Language
English
Region
Netherlands
NLM ID
0217513
Subset
IM
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