Home LiteratureArticle Details
PMID: 24487629 Published · epublish English Journal Article Research Support, Non-U.S. Gov't

Sequence-specific inhibition of microRNA via CRISPR/CRISPRi system.

Scientific reports ·Vol. 4 ·2014-02-03 ·Pages 3943

Zhao Y, Dai Z, Liang Y, Yin M, Ma K, He M, Ouyang H, Teng CB

Abstract

Here, we report a convenient and efficient miRNA inhibition strategy employing the CRISPR system. Using specifically designed gRNAs, miRNA gene has been cut at a single site by Cas9, resulting in knockdown of the miRNA in murine cells. Using a modified CRISPR interference system (CRISPRi), inactive Cas9 can reversibly prevent the expression of both monocistronic miRNAs and polycistronic miRNA clusters. Furthermore, CRISPR/CRISPRi is also capable of suppressing genes in porcine cells.

MeSH Terms
3T3 Cells Animals Bacterial Proteins/metabolism CRISPR-Associated Protein 9 Cell Line Clustered Regularly Interspaced Short Palindromic Repeats/genetics Endonucleases/metabolism Gene Expression Gene Targeting/methods Green Fluorescent Proteins/genetics Mice MicroRNAs/antagonists & inhibitors,genetics RNA, Guide/genetics RNA, Small Interfering/antagonists & inhibitors,genetics Recombinant Fusion Proteins/biosynthesis,genetics Swine
Chemicals
Bacterial Proteins MicroRNAs RNA, Guide RNA, Small Interfering Recombinant Fusion Proteins enhanced green fluorescent protein Green Fluorescent Proteins CRISPR-Associated Protein 9 Cas9 protein, Francisella novicida Endonucleases
Authors & Affiliations
8 authors, click to expand affiliations / ORCID
Zhao Yicheng
1] College of life science, Northeast Forestry University, Harbin, China [2] Department of Biochemistry, College of Animal Sciences, Jilin University, China [3].
Dai Zhen
1] Department of Biochemistry, College of Animal Sciences, Jilin University, China [2].
Liang Yang
1] College of life science, Northeast Forestry University, Harbin, China [2].
Yin Ming
College of Veterinary Medicine, Jilin University, China.
Ma Kuiying
College of Veterinary Medicine, Jilin University, China.
He Mei
College of life science, Northeast Forestry University, Harbin, China.
Ouyang Hongsheng
Department of Biochemistry, College of Animal Sciences, Jilin University, China.
Teng Chun-Bo
College of life science, Northeast Forestry University, Harbin, China.
References (24)
24 references, click to expand
  1. Functional identification of optimized RNAi triggers using a massively parallel sensor assay.
    Mol Cell. 2011 Mar 18;41(6):733-46 PMID: 21353615
  2. In defense of phage: viral suppressors of CRISPR-mediated adaptive immunity in bacteria.
    RNA Biol. 2013 May;10(5):886-90 PMID: 23392292
  3. RNAimmuno: a database of the nonspecific immunological effects of RNA interference and microRNA reagents.
    RNA. 2012 May;18(5):930-5 PMID: 22411954
  4. MicroRNA-19b downregulates insulin 1 through targeting transcription factor NeuroD1.
    FEBS Lett. 2011 Aug 19;585(16):2592-8 PMID: 21781967
  5. Chromosomal deletions and inversions mediated by TALENs and CRISPR/Cas in zebrafish.
    Nucleic Acids Res. 2013 Aug;41(14):e141 PMID: 23748566
  6. Generation of mutant mice by pronuclear injection of circular plasmid expressing Cas9 and single guided RNA.
    Sci Rep. 2013 Nov 27;3:3355 PMID: 24284873
  7. Stable knockdown of microRNA in vivo by lentiviral vectors.
    Nat Methods. 2009 Jan;6(1):63-6 PMID: 19043411
  8. Electrochemical based detection of microRNA, mir21 in breast cancer cells.
    Biosens Bioelectron. 2012 Oct-Dec;38(1):195-201 PMID: 22776181
  9. A system for stable expression of short interfering RNAs in mammalian cells.
    Science. 2002 Apr 19;296(5567):550-3 PMID: 11910072
  10. Double nicking by RNA-guided CRISPR Cas9 for enhanced genome editing specificity.
    Cell. 2013 Sep 12;154(6):1380-9 PMID: 23992846
  11. Identification of direct targets for the miR-17-92 cluster by proteomic analysis.
    Proteomics. 2011 Sep;11(17):3531-9 PMID: 21751348
  12. A protocol for isolation and culture of mesenchymal stem cells from mouse bone marrow.
    Nat Protoc. 2009;4(1):102-6 PMID: 19131962
  13. Generation of gene-modified mice via Cas9/RNA-mediated gene targeting.
    Cell Res. 2013 May;23(5):720-3 PMID: 23545779
  14. RNAi experiments in mouse oocytes and early embryos.
    Cold Spring Harb Protoc. 2009 Jan;2009(1):pdb.top56 PMID: 20147032
  15. TALENs: a widely applicable technology for targeted genome editing.
    Nat Rev Mol Cell Biol. 2013 Jan;14(1):49-55 PMID: 23169466
  16. Efficient nonmeiotic allele introgression in livestock using custom endonucleases.
    Proc Natl Acad Sci U S A. 2013 Oct 8;110(41):16526-31 PMID: 24014591
  17. miR-17~92 miRNA cluster promotes kidney cyst growth in polycystic kidney disease.
    Proc Natl Acad Sci U S A. 2013 Jun 25;110(26):10765-70 PMID: 23759744
  18. Expression of Huntington's disease protein results in apoptotic neurons in the brains of cloned transgenic pigs.
    Hum Mol Genet. 2010 Oct 15;19(20):3983-94 PMID: 20660116
  19. Repurposing CRISPR as an RNA-guided platform for sequence-specific control of gene expression.
    Cell. 2013 Feb 28;152(5):1173-83 PMID: 23452860
  20. Human MxA protein inhibits the replication of classical swine fever virus.
    Virus Res. 2011 Mar;156(1-2):151-5 PMID: 21255621
  21. MiR-18a regulates expression of the pancreatic transcription factor Ptf1a in pancreatic progenitor and acinar cells.
    FEBS Lett. 2012 Feb 17;586(4):422-7 PMID: 22265691
  22. CRISPR-mediated modular RNA-guided regulation of transcription in eukaryotes.
    Cell. 2013 Jul 18;154(2):442-51 PMID: 23849981
  23. Programmable plasmid interference by the CRISPR-Cas system in Thermococcus kodakarensis.
    RNA Biol. 2013 May;10(5):828-40 PMID: 23535213
  24. Therapeutic silencing of microRNA-122 in primates with chronic hepatitis C virus infection.
    Science. 2010 Jan 8;327(5962):198-201 PMID: 19965718
Article Info
Journal
Scientific reports
Abbr.
Sci Rep
ISSN
2045-2322
Published
2014-02-03
Epub
2014-00-03
Pages
3943
Language
English
Region
England
NLM ID
101563288
PMCID
PMC3909901
Subset
IM
Analysis Services
Analysis Services

Contact

No. 2 Wenbo Road, Zhangqiu District, Jinan, Shandong

Qilu Normal University · Genelibs Bioinformatics Lab

750 Shunhua Rd, Jinan

2F, Bldg F, University Science Park

Tel: 0531-88819269

WeChat Official Account

Follow our WeChat subscription account for real-time updates and the latest in medical and biological research.


Business Email

E-mail: product@genelibs.com