Abstract
Here, we report a convenient and efficient miRNA inhibition strategy employing the CRISPR system. Using specifically designed gRNAs, miRNA gene has been cut at a single site by Cas9, resulting in knockdown of the miRNA in murine cells. Using a modified CRISPR interference system (CRISPRi), inactive Cas9 can reversibly prevent the expression of both monocistronic miRNAs and polycistronic miRNA clusters. Furthermore, CRISPR/CRISPRi is also capable of suppressing genes in porcine cells.
MeSH Terms
3T3 Cells
Animals
Bacterial Proteins/metabolism
CRISPR-Associated Protein 9
Cell Line
Clustered Regularly Interspaced Short Palindromic Repeats/genetics
Endonucleases/metabolism
Gene Expression
Gene Targeting/methods
Green Fluorescent Proteins/genetics
Mice
MicroRNAs/antagonists & inhibitors,genetics
RNA, Guide/genetics
RNA, Small Interfering/antagonists & inhibitors,genetics
Recombinant Fusion Proteins/biosynthesis,genetics
Swine
Chemicals
Bacterial Proteins
MicroRNAs
RNA, Guide
RNA, Small Interfering
Recombinant Fusion Proteins
enhanced green fluorescent protein
Green Fluorescent Proteins
CRISPR-Associated Protein 9
Cas9 protein, Francisella novicida
Endonucleases
Authors & Affiliations
8 authors, click to expand affiliations / ORCID
Zhao Yicheng
1] College of life science, Northeast Forestry University, Harbin, China [2] Department of Biochemistry, College of Animal Sciences, Jilin University, China [3].
Dai Zhen
1] Department of Biochemistry, College of Animal Sciences, Jilin University, China [2].
Liang Yang
1] College of life science, Northeast Forestry University, Harbin, China [2].
Yin Ming
College of Veterinary Medicine, Jilin University, China.
Ma Kuiying
College of Veterinary Medicine, Jilin University, China.
He Mei
College of life science, Northeast Forestry University, Harbin, China.
Ouyang Hongsheng
Department of Biochemistry, College of Animal Sciences, Jilin University, China.
Teng Chun-Bo
College of life science, Northeast Forestry University, Harbin, China.
References (24)
24 references, click to expand
-
Functional identification of optimized RNAi triggers using a massively parallel sensor assay.
Mol Cell. 2011 Mar 18;41(6):733-46
PMID: 21353615
-
In defense of phage: viral suppressors of CRISPR-mediated adaptive immunity in bacteria.
RNA Biol. 2013 May;10(5):886-90
PMID: 23392292
-
RNAimmuno: a database of the nonspecific immunological effects of RNA interference and microRNA reagents.
RNA. 2012 May;18(5):930-5
PMID: 22411954
-
MicroRNA-19b downregulates insulin 1 through targeting transcription factor NeuroD1.
FEBS Lett. 2011 Aug 19;585(16):2592-8
PMID: 21781967
-
Chromosomal deletions and inversions mediated by TALENs and CRISPR/Cas in zebrafish.
Nucleic Acids Res. 2013 Aug;41(14):e141
PMID: 23748566
-
Generation of mutant mice by pronuclear injection of circular plasmid expressing Cas9 and single guided RNA.
Sci Rep. 2013 Nov 27;3:3355
PMID: 24284873
-
Stable knockdown of microRNA in vivo by lentiviral vectors.
Nat Methods. 2009 Jan;6(1):63-6
PMID: 19043411
-
Electrochemical based detection of microRNA, mir21 in breast cancer cells.
Biosens Bioelectron. 2012 Oct-Dec;38(1):195-201
PMID: 22776181
-
A system for stable expression of short interfering RNAs in mammalian cells.
Science. 2002 Apr 19;296(5567):550-3
PMID: 11910072
-
Double nicking by RNA-guided CRISPR Cas9 for enhanced genome editing specificity.
Cell. 2013 Sep 12;154(6):1380-9
PMID: 23992846
-
Identification of direct targets for the miR-17-92 cluster by proteomic analysis.
Proteomics. 2011 Sep;11(17):3531-9
PMID: 21751348
-
A protocol for isolation and culture of mesenchymal stem cells from mouse bone marrow.
Nat Protoc. 2009;4(1):102-6
PMID: 19131962
-
Generation of gene-modified mice via Cas9/RNA-mediated gene targeting.
Cell Res. 2013 May;23(5):720-3
PMID: 23545779
-
RNAi experiments in mouse oocytes and early embryos.
Cold Spring Harb Protoc. 2009 Jan;2009(1):pdb.top56
PMID: 20147032
-
TALENs: a widely applicable technology for targeted genome editing.
Nat Rev Mol Cell Biol. 2013 Jan;14(1):49-55
PMID: 23169466
-
Efficient nonmeiotic allele introgression in livestock using custom endonucleases.
Proc Natl Acad Sci U S A. 2013 Oct 8;110(41):16526-31
PMID: 24014591
-
miR-17~92 miRNA cluster promotes kidney cyst growth in polycystic kidney disease.
Proc Natl Acad Sci U S A. 2013 Jun 25;110(26):10765-70
PMID: 23759744
-
Expression of Huntington's disease protein results in apoptotic neurons in the brains of cloned transgenic pigs.
Hum Mol Genet. 2010 Oct 15;19(20):3983-94
PMID: 20660116
-
Repurposing CRISPR as an RNA-guided platform for sequence-specific control of gene expression.
Cell. 2013 Feb 28;152(5):1173-83
PMID: 23452860
-
Human MxA protein inhibits the replication of classical swine fever virus.
Virus Res. 2011 Mar;156(1-2):151-5
PMID: 21255621
-
MiR-18a regulates expression of the pancreatic transcription factor Ptf1a in pancreatic progenitor and acinar cells.
FEBS Lett. 2012 Feb 17;586(4):422-7
PMID: 22265691
-
CRISPR-mediated modular RNA-guided regulation of transcription in eukaryotes.
Cell. 2013 Jul 18;154(2):442-51
PMID: 23849981
-
Programmable plasmid interference by the CRISPR-Cas system in Thermococcus kodakarensis.
RNA Biol. 2013 May;10(5):828-40
PMID: 23535213
-
Therapeutic silencing of microRNA-122 in primates with chronic hepatitis C virus infection.
Science. 2010 Jan 8;327(5962):198-201
PMID: 19965718