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PMID: 2437974 Published · ppublish English Journal Article Research Support, U.S. Gov't, P.H.S.

Why is gramicidin valence selective? A theoretical study.

Biophysical journal ·Vol. 51 ·No. 4 ·1987-04-00 ·Pages 661-72

Sung SS, Jordan PC

Abstract

Calculations contrasting the channel solvation energy for cesium ions and chloride ions associated with water in gramicidin-like channels are presented. The energy profile for the cation exhibits a deep well at the channel entrance; within the single file region the solvation energy is roughly constant. The anion exhibits a totally different energy profile. There is an energy barrier at the channel entrance; if the ion could surmount this barrier, it would be quite stable within the channel. At the channel entrance, the calculated solvation energy difference between anion and cation is approximately 15 kcal mol-1. This is completely consistent with the observation that chloride neither permeates nor blocks the channel since the estimated rate of ion entry would be approximately 0.01-10(-5) s-1, far slower than the rate at which the channel dimer dissociates into monomers.

MeSH Terms
Cesium Chlorides Gramicidin Ion Channels/physiology Models, Biological Protein Conformation Thermodynamics
Chemicals
Chlorides Ion Channels Gramicidin Cesium
Authors & Affiliations
2 authors, click to expand affiliations / ORCID
Sung S S
Jordan P C
References (23)
23 references, click to expand
  1. The gramicidin A transmembrane channel: a proposed pi(L,D) helix.
    Proc Natl Acad Sci U S A. 1971 Mar;68(3):672-6 PMID: 5276779
  2. Ionic selectivity of Na and K channels of nerve membranes.
    Membranes. 1975;3:255-323 PMID: 1202319
  3. Voltage-induced thickness changes of lipid bilayer membranes and the effect of an electrin field on gramicidin A channel formation.
    Biochim Biophys Acta. 1976 Mar 19;426(3):570-80 PMID: 57801
  4. Influence of membrane thickness and ion concentration on the properties of the gramicidin a channel. Autocorrelation, spectral power density, relaxation and single-channel studies.
    Biochim Biophys Acta. 1977 Jan 4;464(1):127-41 PMID: 64260
  5. Helical channels in crystals of gramicidin A and of a cesium--gramicidin A complex: an x-ray diffraction study.
    J Mol Biol. 1978 May 5;121(1):41-54 PMID: 77905
  6. Interaction of ions and water in gramicidin A channels: streaming potentials across lipid bilayer membranes.
    J Gen Physiol. 1978 Sep;72(3):327-40 PMID: 81264
  7. Water permeability of gramicidin A-treated lipid bilayer membranes.
    J Gen Physiol. 1978 Sep;72(3):341-50 PMID: 81265
  8. Number of water molecules coupled to the transport of sodium, potassium and hydrogen ions via gramicidin, nonactin or valinomycin.
    Biochim Biophys Acta. 1978 Sep 22;512(2):436-51 PMID: 81687
  9. Gramicidin A crystals contain two cation binding sites per channel.
    Nature. 1979 Jun 21;279(5715):723-5 PMID: 88018
  10. Ion movements in gramicidin pores. An example of single-file transport.
    Biochim Biophys Acta. 1980 Nov 4;602(2):331-54 PMID: 6159005
  11. Molecular dynamics study of ion transport in transmembrane protein channels.
    Biophys Chem. 1981 Apr;13(2):105-16 PMID: 6266545
  12. Location of monovalent cation binding sites in the gramicidin channel.
    Proc Natl Acad Sci U S A. 1982 Jan;79(2):390-4 PMID: 6176992
  13. Ion interactions in (1-13C)D-Val8 and D-Leu14 analogs of gramicidin A, the helix sense of the channel and location of ion binding sites.
    J Membr Biol. 1982;69(3):225-31 PMID: 6183433
  14. Electrostatic modeling of ion pores. II. Effects attributable to the membrane dipole potential.
    Biophys J. 1983 Feb;41(2):189-95 PMID: 6188503
  15. Ion-specific diffusion rates through transmembrane protein channels. A molecular dynamics study.
    Biophys Chem. 1983 Nov;18(4):323-37 PMID: 6318843
  16. Water structure in the Gramicidin A transmembrane channel.
    Biochim Biophys Acta. 1984 Apr 11;771(2):151-64 PMID: 6200136
  17. The gramicidin A channel: comparison of the energy profiles of Na+, K+ and Cs+. Influence of the flexibility of the ethanolamine end chain on the profiles.
    FEBS Lett. 1984 Aug 6;173(2):301-6 PMID: 6204889
  18. Structure and dynamics of ion transport through gramicidin A.
    Biophys J. 1984 Aug;46(2):229-48 PMID: 6206901
  19. Molecular dynamics simulation of cation motion in water-filled gramicidinlike pores.
    Biophys J. 1984 Dec;46(6):805-19 PMID: 6083812
  20. Interaction of K+ ion with the solvated gramicidin A transmembrane channel.
    Biophys J. 1985 Mar;47(3):327-35 PMID: 2579687
  21. Solvent effects in ionic transport through transmembrane protein channels.
    J Theor Biol. 1985 Feb 7;112(3):459-64 PMID: 2580190
  22. Molecular dynamics of ion transport through transmembrane model channels.
    Annu Rev Biophys Biophys Chem. 1985;14:315-30 PMID: 2408632
  23. Structure of gramicidin A.
    Biophys J. 1986 Jan;49(1):295-306 PMID: 2420381
Article Info
Journal
Biophysical journal
Abbr.
Biophys J
ISSN
0006-3495
Published
1987-04-00
Pages
661-72
Language
English
Region
United States
NLM ID
0370626
PMCID
PMC1329938
Subset
IM
Grants
NIGMS NIH HHS · GM-28643 · United States
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