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Overview of the CCP4 suite and current developments.
Acta Crystallogr D Biol Crystallogr. 2011 Apr;67(Pt 4):235-42
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Decision-making in structure solution using Bayesian estimates of map quality: the PHENIX AutoSol wizard.
Acta Crystallogr D Biol Crystallogr. 2009 Jun;65(Pt 6):582-601
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Experimental phasing with SHELXC/D/E: combining chain tracing with density modification.
Acta Crystallogr D Biol Crystallogr. 2010 Apr;66(Pt 4):479-85
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The structural basis for the interaction between the CAF1 nuclease and the NOT1 scaffold of the human CCR4-NOT deadenylase complex.
Nucleic Acids Res. 2012 Nov;40(21):11058-72
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Deciphering correct strategies for multiprotein complex assembly by co-expression: application to complexes as large as the histone octamer.
J Struct Biol. 2011 Aug;175(2):178-88
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NOT10 and C2orf29/NOT11 form a conserved module of the CCR4-NOT complex that docks onto the NOT1 N-terminal domain.
RNA Biol. 2013 Feb;10(2):228-44
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The Buccaneer software for automated model building. 1. Tracing protein chains.
Acta Crystallogr D Biol Crystallogr. 2006 Sep;62(Pt 9):1002-11
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Automated structure solution with autoSHARP.
Methods Mol Biol. 2007;364:215-30
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Structural basis for the recruitment of the human CCR4-NOT deadenylase complex by tristetraprolin.
Nat Struct Mol Biol. 2013 Jun;20(6):735-9
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Mutual synergistic folding in recruitment of CBP/p300 by p160 nuclear receptor coactivators.
Nature. 2002 Jan 31;415(6871):549-53
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RNA decay machines: deadenylation by the Ccr4-not and Pan2-Pan3 complexes.
Biochim Biophys Acta. 2013 Jun-Jul;1829(6-7):561-70
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Human Ccr4-Not complexes contain variable deadenylase subunits.
Biochem J. 2009 Aug 27;422(3):443-53
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Control of maternal mRNA stability in germ cells and early embryos.
Biochim Biophys Acta. 2013 Jun-Jul;1829(6-7):714-24
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NANOS2 interacts with the CCR4-NOT deadenylation complex and leads to suppression of specific RNAs.
Proc Natl Acad Sci U S A. 2010 Feb 23;107(8):3594-9
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Preparation of selenomethionyl proteins for phase determination.
Methods Enzymol. 1997;276:523-30
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Combining constraints for electron-density modification.
Methods Enzymol. 1997;277:53-64
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Intrinsically unstructured proteins and their functions.
Nat Rev Mol Cell Biol. 2005 Mar;6(3):197-208
PMID: 15738986
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MolProbity: all-atom structure validation for macromolecular crystallography.
Acta Crystallogr D Biol Crystallogr. 2010 Jan;66(Pt 1):12-21
PMID: 20057044
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Architecture of the nuclease module of the yeast Ccr4-not complex: the Not1-Caf1-Ccr4 interaction.
Mol Cell. 2012 Oct 26;48(2):207-18
PMID: 22959269
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An unstructured initiation site is required for efficient proteasome-mediated degradation.
Nat Struct Mol Biol. 2004 Sep;11(9):830-7
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Isolation and characterization of human orthologs of yeast CCR4-NOT complex subunits.
Nucleic Acids Res. 2000 Feb 1;28(3):809-17
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The roles of ribosomal proteins in the structure assembly, and evolution of the large ribosomal subunit.
J Mol Biol. 2004 Jun 25;340(1):141-77
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Comparison of ARM and HEAT protein repeats.
J Mol Biol. 2001 May 25;309(1):1-18
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Translational repression by deadenylases.
J Biol Chem. 2010 Sep 10;285(37):28506-13
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Roquin promotes constitutive mRNA decay via a conserved class of stem-loop recognition motifs.
Cell. 2013 May 9;153(4):869-81
PMID: 23663784
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A complex containing the CCR4 and CAF1 proteins is involved in mRNA deadenylation in Drosophila.
EMBO J. 2004 Jul 21;23(14):2862-71
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The role of the CNOT1 subunit of the CCR4-NOT complex in mRNA deadenylation and cell viability.
Protein Cell. 2011 Sep;2(9):755-63
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Repression of promoter activity by CNOT2, a subunit of the transcription regulatory Ccr4-not complex.
J Biol Chem. 2004 Mar 19;279(12):10848-54
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CNOT2 depletion disrupts and inhibits the CCR4-NOT deadenylase complex and induces apoptotic cell death.
Genes Cells. 2011 Apr;16(4):368-79
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Bicaudal-C recruits CCR4-NOT deadenylase to target mRNAs and regulates oogenesis, cytoskeletal organization, and its own expression.
Dev Cell. 2007 Nov;13(5):691-704
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The CCR4 and CAF1 proteins of the CCR4-NOT complex are physically and functionally separated from NOT2, NOT4, and NOT5.
Mol Cell Biol. 1999 Oct;19(10):6642-51
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CUP promotes deadenylation and inhibits decapping of mRNA targets.
Genes Dev. 2011 Sep 15;25(18):1955-67
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The interactions of GW182 proteins with PABP and deadenylases are required for both translational repression and degradation of miRNA targets.
Nucleic Acids Res. 2013 Jan;41(2):978-94
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GW182 proteins directly recruit cytoplasmic deadenylase complexes to miRNA targets.
Mol Cell. 2011 Oct 7;44(1):120-33
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Subunits of the Drosophila CCR4-NOT complex and their roles in mRNA deadenylation.
RNA. 2010 Jul;16(7):1356-70
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The Ccr4--not complex.
Gene. 2012 Jan 15;492(1):42-53
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A conserved role for cytoplasmic poly(A)-binding protein 1 (PABPC1) in nonsense-mediated mRNA decay.
EMBO J. 2007 Mar 21;26(6):1591-601
PMID: 17318186
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Coot: model-building tools for molecular graphics.
Acta Crystallogr D Biol Crystallogr. 2004 Dec;60(Pt 12 Pt 1):2126-32
PMID: 15572765
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C2ORF29/CNOT11 and CNOT10 form a new module of the CCR4-NOT complex.
RNA Biol. 2013 Feb;10(2):267-76
PMID: 23232451
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Intrinsically disordered proteins: a 10-year recap.
Trends Biochem Sci. 2012 Dec;37(12):509-16
PMID: 22989858
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Characterization of mutations in NOT2 indicates that it plays an important role in maintaining the integrity of the CCR4-NOT complex.
J Mol Biol. 2002 Sep 6;322(1):27-39
PMID: 12215412
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PHENIX: a comprehensive Python-based system for macromolecular structure solution.
Acta Crystallogr D Biol Crystallogr. 2010 Feb;66(Pt 2):213-21
PMID: 20124702
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The essential function of Not1 lies within the Ccr4-Not complex.
J Mol Biol. 2000 Oct 20;303(2):131-43
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miRNA repression involves GW182-mediated recruitment of CCR4-NOT through conserved W-containing motifs.
Nat Struct Mol Biol. 2011 Oct 07;18(11):1218-26
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XDS.
Acta Crystallogr D Biol Crystallogr. 2010 Feb;66(Pt 2):125-32
PMID: 20124692
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GW182 proteins cause PABP dissociation from silenced miRNA targets in the absence of deadenylation.
EMBO J. 2013 Apr 3;32(7):1052-65
PMID: 23463101
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Phaser crystallographic software.
J Appl Crystallogr. 2007 Aug 1;40(Pt 4):658-674
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The NOT proteins are part of the CCR4 transcriptional complex and affect gene expression both positively and negatively.
EMBO J. 1998 Feb 16;17(4):1096-106
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The social life of ribosomal proteins.
FEBS J. 2005 May;272(9):2098-108
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miRNA-mediated deadenylation is orchestrated by GW182 through two conserved motifs that interact with CCR4-NOT.
Nat Struct Mol Biol. 2011 Oct 07;18(11):1211-7
PMID: 21984185
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Human Ccr4-Not complex is a ligand-dependent repressor of nuclear receptor-mediated transcription.
EMBO J. 2006 Jul 12;25(13):3089-99
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