-
The new landscape of protein ubiquitination.
Nat Biotechnol. 2011 Dec 08;29(12):1098-100
PMID: 22158364
-
Dual roles of Atg8-PE deconjugation by Atg4 in autophagy.
Autophagy. 2012 Jun;8(6):883-92
PMID: 22652539
-
Autophagy: basic principles and relevance to disease.
Annu Rev Pathol. 2008;3:427-55
PMID: 18039129
-
Association of beta-arrestin and TRAF6 negatively regulates Toll-like receptor-interleukin 1 receptor signaling.
Nat Immunol. 2006 Feb;7(2):139-47
PMID: 16378096
-
Proline dehydrogenase (oxidase), a mitochondrial tumor suppressor, and autophagy under the hypoxia microenvironment.
Autophagy. 2012 Sep;8(9):1407-9
PMID: 22885468
-
The Atg12-Atg5 conjugate has a novel E3-like activity for protein lipidation in autophagy.
J Biol Chem. 2007 Dec 28;282(52):37298-302
PMID: 17986448
-
Regulation mechanisms and signaling pathways of autophagy.
Annu Rev Genet. 2009;43:67-93
PMID: 19653858
-
Ret finger protein 2 enhances ionizing radiation-induced apoptosis via degradation of AKT and MDM2.
Eur J Cell Biol. 2011 May;90(5):420-31
PMID: 21333377
-
Autophagy, immunity, and microbial adaptations.
Cell Host Microbe. 2009 Jun 18;5(6):527-49
PMID: 19527881
-
Non-canonical ubiquitin-based signals for proteasomal degradation.
J Cell Sci. 2012 Feb 1;125(Pt 3):539-48
PMID: 22389393
-
Nedd4-dependent lysine-11-linked polyubiquitination of the tumour suppressor Beclin 1.
Biochem J. 2012 Jan 1;441(1):399-406
PMID: 21936852
-
mTOR inhibits autophagy by controlling ULK1 ubiquitylation, self-association and function through AMBRA1 and TRAF6.
Nat Cell Biol. 2013 Apr;15(4):406-16
PMID: 23524951
-
TRAF6 and A20 regulate lysine 63-linked ubiquitination of Beclin-1 to control TLR4-induced autophagy.
Sci Signal. 2010 May 25;3(123):ra42
PMID: 20501938
-
Mitofusin 1 and mitofusin 2 are ubiquitinated in a PINK1/parkin-dependent manner upon induction of mitophagy.
Hum Mol Genet. 2010 Dec 15;19(24):4861-70
PMID: 20871098
-
PINK1-parkin-dependent mitophagy involves ubiquitination of mitofusins 1 and 2: Implications for Parkinson disease pathogenesis.
Autophagy. 2011 Feb;7(2):243-5
PMID: 21139416
-
Autophagy and metabolism.
Science. 2010 Dec 3;330(6009):1344-8
PMID: 21127245
-
Nix, a receptor protein for mitophagy in mammals.
Autophagy. 2010 Apr;6(3):433-5
PMID: 20200478
-
Autophagy and aging.
Cell. 2011 Sep 2;146(5):682-95
PMID: 21884931
-
A role for Atg8-PE deconjugation in autophagosome biogenesis.
Autophagy. 2012 May 1;8(5):780-93
PMID: 22622160
-
The dynamic nature of autophagy in cancer.
Genes Dev. 2011 Oct 1;25(19):1999-2010
PMID: 21979913
-
Autophagy and the integrated stress response.
Mol Cell. 2010 Oct 22;40(2):280-93
PMID: 20965422
-
RING finger mutations that abolish c-Cbl-directed polyubiquitination and downregulation of the EGF receptor are insufficient for cell transformation.
Mol Cell. 2001 Feb;7(2):355-65
PMID: 11239464
-
Mechanism and functions of membrane binding by the Atg5-Atg12/Atg16 complex during autophagosome formation.
EMBO J. 2012 Nov 14;31(22):4304-17
PMID: 23064152
-
Autophagy in yeast: a TOR-mediated response to nutrient starvation.
Curr Top Microbiol Immunol. 2004;279:73-84
PMID: 14560952
-
Defective autophagy control by the p53 rheostat in cancer.
Cell Cycle. 2010 Jan 15;9(2):250-5
PMID: 20023384
-
Autophagy in infection.
Curr Opin Cell Biol. 2010 Apr;22(2):252-62
PMID: 20116986
-
Autophagy in the pathogenesis of disease.
Cell. 2008 Jan 11;132(1):27-42
PMID: 18191218
-
UBR box N-recognin-4 (UBR4), an N-recognin of the N-end rule pathway, and its role in yolk sac vascular development and autophagy.
Proc Natl Acad Sci U S A. 2013 Mar 5;110(10):3800-5
PMID: 23431188
-
Wnt signalling regulates paxillin ubiquitination essential for mesodermal cell motility.
Nat Cell Biol. 2007 Jul;9(7):813-21
PMID: 17558393
-
Parkin-mediated K63-linked polyubiquitination: a signal for targeting misfolded proteins to the aggresome-autophagy pathway.
Autophagy. 2008 Jan;4(1):85-7
PMID: 17957134
-
The ubiquitin code.
Annu Rev Biochem. 2012;81:203-29
PMID: 22524316
-
TOR-dependent control of autophagy: biting the hand that feeds.
Curr Opin Cell Biol. 2010 Apr;22(2):157-68
PMID: 20006481
-
Rab GTPase-activating proteins in autophagy: regulation of endocytic and autophagy pathways by direct binding to human ATG8 modifiers.
Mol Cell Biol. 2012 May;32(9):1733-44
PMID: 22354992
-
The Atg8 and Atg12 ubiquitin-like conjugation systems in macroautophagy. 'Protein modifications: beyond the usual suspects' review series.
EMBO Rep. 2008 Sep;9(9):859-64
PMID: 18704115
-
Lethal weapons: DAP-kinase, autophagy and cell death: DAP-kinase regulates autophagy.
Curr Opin Cell Biol. 2010 Apr;22(2):199-205
PMID: 20005690
-
Resveratrol inhibits mTOR signaling by promoting the interaction between mTOR and DEPTOR.
J Biol Chem. 2010 Nov 19;285(47):36387-94
PMID: 20851890
-
Autophagy: renovation of cells and tissues.
Cell. 2011 Nov 11;147(4):728-41
PMID: 22078875
-
Sequential quality-control checkpoints triage misfolded cystic fibrosis transmembrane conductance regulator.
Cell. 2006 Aug 11;126(3):571-82
PMID: 16901789
-
Epidermal growth factor (EGF) decreased endothelin-2 (ET-2) production in human renal adenocarcinoma cells.
FEBS Lett. 1991 Dec 16;295(1-3):17-21
PMID: 1722462
-
TRIM13 regulates ER stress induced autophagy and clonogenic ability of the cells.
Biochim Biophys Acta. 2012 Feb;1823(2):316-26
PMID: 22178386
-
c-Cbl targets active Src for autophagy.
Nat Cell Biol. 2011 Dec 22;14(1):48-9
PMID: 22193164
-
Dynamics and diversity in autophagy mechanisms: lessons from yeast.
Nat Rev Mol Cell Biol. 2009 Jul;10(7):458-67
PMID: 19491929
-
The ubiquitin ligase RNF5 regulates antiviral responses by mediating degradation of the adaptor protein MITA.
Immunity. 2009 Mar 20;30(3):397-407
PMID: 19285439
-
Autophagy and the immune system.
Annu Rev Immunol. 2012;30:611-46
PMID: 22449030
-
Mechanisms underlying ubiquitination.
Annu Rev Biochem. 2001;70:503-33
PMID: 11395416
-
New targets for acetylation in autophagy.
Sci Signal. 2012 Jul 03;5(231):pe29
PMID: 22763338
-
PINK1 controls mitochondrial localization of Parkin through direct phosphorylation.
Biochem Biophys Res Commun. 2008 Dec 19;377(3):975-80
PMID: 18957282
-
HsAtg4B/HsApg4B/autophagin-1 cleaves the carboxyl termini of three human Atg8 homologues and delipidates microtubule-associated protein light chain 3- and GABAA receptor-associated protein-phospholipid conjugates.
J Biol Chem. 2004 Aug 27;279(35):36268-76
PMID: 15187094
-
Disease-causing mutations in parkin impair mitochondrial ubiquitination, aggregation, and HDAC6-dependent mitophagy.
J Cell Biol. 2010 May 17;189(4):671-9
PMID: 20457763
-
Parkin is recruited selectively to impaired mitochondria and promotes their autophagy.
J Cell Biol. 2008 Dec 1;183(5):795-803
PMID: 19029340
-
PINK1/Parkin-mediated mitophagy is dependent on VDAC1 and p62/SQSTM1.
Nat Cell Biol. 2010 Feb;12(2):119-31
PMID: 20098416
-
The ubiquitin system, an immense realm.
Annu Rev Biochem. 2012;81:167-76
PMID: 22663079
-
The E3 ubiquitin ligase RNF5 targets virus-induced signaling adaptor for ubiquitination and degradation.
J Immunol. 2010 Jun 1;184(11):6249-55
PMID: 20483786
-
Parkin, PINK1, and DJ-1 form a ubiquitin E3 ligase complex promoting unfolded protein degradation.
J Clin Invest. 2009 Mar;119(3):650-60
PMID: 19229105
-
A dual role of p53 in the control of autophagy.
Autophagy. 2008 Aug;4(6):810-4
PMID: 18604159
-
Parkin mono-ubiquitinates Bcl-2 and regulates autophagy.
J Biol Chem. 2010 Dec 3;285(49):38214-23
PMID: 20889974
-
Ubiquitin-independent function of optineurin in autophagic clearance of protein aggregates.
J Cell Sci. 2013 Jan 15;126(Pt 2):580-92
PMID: 23178947
-
Traf6 and A20 differentially regulate TLR4-induced autophagy by affecting the ubiquitination of Beclin 1.
Autophagy. 2010 Oct;6(7):986-7
PMID: 20798608
-
Self-eating and self-killing: crosstalk between autophagy and apoptosis.
Nat Rev Mol Cell Biol. 2007 Sep;8(9):741-52
PMID: 17717517
-
Autophagic targeting of Src promotes cancer cell survival following reduced FAK signalling.
Nat Cell Biol. 2011 Dec 04;14(1):51-60
PMID: 22138575
-
Regulation and function of autophagy during cell survival and cell death.
Cold Spring Harb Perspect Biol. 2012 Jun 01;4(6):
PMID: 22661635
-
RING domain E3 ubiquitin ligases.
Annu Rev Biochem. 2009;78:399-434
PMID: 19489725
-
The deubiquitinating enzyme USP36 controls selective autophagy activation by ubiquitinated proteins.
Autophagy. 2012 May 1;8(5):767-79
PMID: 22622177
-
Regulation of ER stress-induced macroautophagy by protein kinase C.
Autophagy. 2008 Aug;4(6):841-3
PMID: 18670192
-
Regulation of ATG4B stability by RNF5 limits basal levels of autophagy and influences susceptibility to bacterial infection.
PLoS Genet. 2012;8(10):e1003007
PMID: 23093945
-
Regulation of autophagy by cytoplasmic p53.
Nat Cell Biol. 2008 Jun;10(6):676-87
PMID: 18454141
-
Landscape of the PARKIN-dependent ubiquitylome in response to mitochondrial depolarization.
Nature. 2013 Apr 18;496(7445):372-6
PMID: 23503661
-
Feedback on fat: p62-mTORC1-autophagy connections.
Cell. 2011 Nov 11;147(4):724-7
PMID: 22078874
-
The RBCC gene RFP2 (Leu5) encodes a novel transmembrane E3 ubiquitin ligase involved in ERAD.
Mol Biol Cell. 2007 May;18(5):1670-82
PMID: 17314412
-
The von Hippel-Lindau tumor suppressor protein promotes c-Cbl-independent poly-ubiquitylation and degradation of the activated EGFR.
PLoS One. 2011;6(9):e23936
PMID: 21949687
-
The DUB-ious lack of ALIS in Salmonella infection: a Salmonella deubiquitinase regulates the autophagy of protein aggregates.
Autophagy. 2012 Dec;8(12):1824-6
PMID: 22931829
-
Gp78 cooperates with RMA1 in endoplasmic reticulum-associated degradation of CFTRDeltaF508.
Mol Biol Cell. 2008 Apr;19(4):1328-36
PMID: 18216283
-
DJ-1 null dopaminergic neuronal cells exhibit defects in mitochondrial function and structure: involvement of mitochondrial complex I assembly.
PLoS One. 2012;7(3):e32629
PMID: 22403686
-
Regulation of endoplasmic reticulum-associated degradation by RNF5-dependent ubiquitination of JNK-associated membrane protein (JAMP).
J Biol Chem. 2009 May 1;284(18):12099-109
PMID: 19269966
-
Quantitative proteomics reveals the function of unconventional ubiquitin chains in proteasomal degradation.
Cell. 2009 Apr 3;137(1):133-45
PMID: 19345192
-
Broad activation of the ubiquitin-proteasome system by Parkin is critical for mitophagy.
Hum Mol Genet. 2011 May 1;20(9):1726-37
PMID: 21296869
-
DEPTOR is an mTOR inhibitor frequently overexpressed in multiple myeloma cells and required for their survival.
Cell. 2009 May 29;137(5):873-86
PMID: 19446321
-
Autophagy modulation as a potential therapeutic target for diverse diseases.
Nat Rev Drug Discov. 2012 Sep;11(9):709-30
PMID: 22935804
-
NDP52, a novel autophagy receptor for ubiquitin-decorated cytosolic bacteria.
Autophagy. 2010 Feb;6(2):288-9
PMID: 20104023
-
Control of autophagy as a therapy for neurodegenerative disease.
Nat Rev Neurol. 2011 Dec 20;8(2):108-17
PMID: 22187000
-
Autophagy gone awry in neurodegenerative diseases.
Nat Neurosci. 2010 Jul;13(7):805-11
PMID: 20581817
-
Autophagy as a target for anticancer therapy.
Nat Rev Clin Oncol. 2011 May 17;8(9):528-39
PMID: 21587219
-
Autophagy in immunity and inflammation.
Nature. 2011 Jan 20;469(7330):323-35
PMID: 21248839
-
Regulating the regulator: negative regulation of Cbl ubiquitin ligases.
Trends Biochem Sci. 2006 Feb;31(2):79-88
PMID: 16406635
-
Potential therapeutic applications of autophagy.
Nat Rev Drug Discov. 2007 Apr;6(4):304-12
PMID: 17396135
-
AMPK-dependent phosphorylation of ULK1 regulates ATG9 localization.
Autophagy. 2012 Aug;8(8):1197-214
PMID: 22932492
-
p53 post-translational modification: deregulated in tumorigenesis.
Trends Mol Med. 2010 Nov;16(11):528-36
PMID: 20932800
-
mTOR drives its own activation via SCF(βTrCP)-dependent degradation of the mTOR inhibitor DEPTOR.
Mol Cell. 2011 Oct 21;44(2):290-303
PMID: 22017875
-
Atg4 recycles inappropriately lipidated Atg8 to promote autophagosome biogenesis.
Autophagy. 2012 Feb 1;8(2):177-86
PMID: 22240591
-
The tumor suppressor cylindromatosis (CYLD) acts as a negative regulator for toll-like receptor 2 signaling via negative cross-talk with TRAF6 AND TRAF7.
J Biol Chem. 2005 Dec 9;280(49):41111-21
PMID: 16230348
-
The Three Musketeers of Autophagy: phosphorylation, ubiquitylation and acetylation.
Trends Cell Biol. 2011 Apr;21(4):195-201
PMID: 21277210
-
Negative regulation of autophagy.
Cell Death Differ. 2010 Dec;17(12):1807-15
PMID: 20865012
-
RNF5, a RING finger protein that regulates cell motility by targeting paxillin ubiquitination and altered localization.
Mol Cell Biol. 2003 Aug;23(15):5331-45
PMID: 12861019
-
Autophagy regulation by p53.
Curr Opin Cell Biol. 2010 Apr;22(2):181-5
PMID: 20044243
-
Deregulated proteolysis by the F-box proteins SKP2 and beta-TrCP: tipping the scales of cancer.
Nat Rev Cancer. 2008 Jun;8(6):438-49
PMID: 18500245
-
Proteasome and p97 mediate mitophagy and degradation of mitofusins induced by Parkin.
J Cell Biol. 2010 Dec 27;191(7):1367-80
PMID: 21173115
-
Biogenesis and cargo selectivity of autophagosomes.
Annu Rev Biochem. 2011;80:125-56
PMID: 21548784
-
Autophagy induced by deficiency of sphingosine-1-phosphate phosphohydrolase 1 is switched to apoptosis by calpain-mediated autophagy-related gene 5 (Atg5) cleavage.
J Biol Chem. 2011 Dec 30;286(52):44380-90
PMID: 22052905
-
RNF185, a novel mitochondrial ubiquitin E3 ligase, regulates autophagy through interaction with BNIP1.
PLoS One. 2011;6(9):e24367
PMID: 21931693
-
Autophagy: from basic science to clinical application.
Mucosal Immunol. 2009 Jul;2(4):315-30
PMID: 19421182
-
Image-based genome-wide siRNA screen identifies selective autophagy factors.
Nature. 2011 Dec 1;480(7375):113-7
PMID: 22020285
-
Physiological functions of the HECT family of ubiquitin ligases.
Nat Rev Mol Cell Biol. 2009 Jun;10(6):398-409
PMID: 19436320
-
DEPTOR, an mTOR inhibitor, is a physiological substrate of SCF(βTrCP) E3 ubiquitin ligase and regulates survival and autophagy.
Mol Cell. 2011 Oct 21;44(2):304-16
PMID: 22017876
-
Activation of the IkappaB kinase complex by TRAF6 requires a dimeric ubiquitin-conjugating enzyme complex and a unique polyubiquitin chain.
Cell. 2000 Oct 13;103(2):351-61
PMID: 11057907
-
Integrin-regulated FAK-Src signaling in normal and cancer cells.
Curr Opin Cell Biol. 2006 Oct;18(5):516-23
PMID: 16919435
-
HDAC6 controls autophagosome maturation essential for ubiquitin-selective quality-control autophagy.
EMBO J. 2010 Mar 3;29(5):969-80
PMID: 20075865
-
Ubiquitin-specific protease 4 (USP4) targets TRAF2 and TRAF6 for deubiquitination and inhibits TNFα-induced cancer cell migration.
Biochem J. 2012 Feb 1;441(3):979-86
PMID: 22029577
-
Role of AMPK-mTOR-Ulk1/2 in the regulation of autophagy: cross talk, shortcuts, and feedbacks.
Mol Cell Biol. 2012 Jan;32(1):2-11
PMID: 22025673
-
The ubiquitin system.
Annu Rev Biochem. 1998;67:425-79
PMID: 9759494
-
DEPTOR ubiquitination and destruction by SCF(β-TrCP).
Am J Physiol Endocrinol Metab. 2012 Jul 15;303(2):E163-9
PMID: 22454292
-
Regulation of autophagosome formation by Rho kinase.
Cell Signal. 2013 Jan;25(1):1-11
PMID: 22975682