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PMID: 23518283 Published · ppublish English Journal Article

The International Oryza Map Alignment Project: development of a genus-wide comparative genomics platform to help solve the 9 billion-people question.

Current opinion in plant biology ·Vol. 16 ·No. 2 ·2013-05-00 ·Pages 147-56

Jacquemin J, Bhatia D, Singh K, Wing RA

Abstract

The wild relatives of rice contain a virtually untapped reservoir of traits that can be used help drive the 21st century green revolution aimed at solving world food security issues by 2050. To better understand and exploit the 23 species of the Oryza genus the rice research community is developing foundational resources composed of: 1) reference genomes and transcriptomes for all 23 species; 2) advanced mapping populations for functional and breeding studies; and 3) in situ conservation sites for ecological, evolutionary and population genomics. To this end, 16 genome sequencing projects are currently underway, and all completed assemblies have been annotated; and several advanced mapping populations have been developed, and more will be generated, mapped, and phenotyped, to uncover useful alleles. As wild Oryza populations are threatened by human activity and climate change, we also discuss the urgent need for sustainable in situ conservation of the genus.

MeSH Terms
Chromosome Mapping Conserved Sequence/genetics Genome, Plant/genetics Genomics Humans Oryza/genetics Sequence Analysis, DNA
Authors & Affiliations
4 authors, click to expand affiliations / ORCID
Jacquemin Julie
Arizona Genomics Institute, School of Plant Sciences, University of Arizona, Tucson, AZ 85721, USA.
Bhatia Dharminder
Singh Kuldeep
Wing Rod A
Article Info
Journal
Current opinion in plant biology
Abbr.
Curr Opin Plant Biol
ISSN
1879-0356
Published
2013-05-00
Epub
2013-00-19
Pages
147-56
Language
English
Region
England
NLM ID
100883395
Subset
IM
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