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PMID: 23273978 Published · ppublish English Journal Article Research Support, Non-U.S. Gov't

eRNAs are required for p53-dependent enhancer activity and gene transcription.

Molecular cell ·Vol. 49 ·No. 3 ·2013-02-07 ·Pages 524-35

Melo CA, Drost J, Wijchers PJ, van de Werken H, de Wit E, Oude Vrielink JA, Elkon R, Melo SA, Léveillé N, Kalluri R, de Laat W, Agami R

Abstract

Binding within or nearby target genes involved in cell proliferation and survival enables the p53 tumor suppressor gene to regulate their transcription and cell-cycle progression. Using genome-wide chromatin-binding profiles, we describe binding of p53 also to regions located distantly from any known p53 target gene. Interestingly, many of these regions possess conserved p53-binding sites and all known hallmarks of enhancer regions. We demonstrate that these p53-bound enhancer regions (p53BERs) indeed contain enhancer activity and interact intrachromosomally with multiple neighboring genes to convey long-distance p53-dependent transcription regulation. Furthermore, p53BERs produce, in a p53-dependent manner, enhancer RNAs (eRNAs) that are required for efficient transcriptional enhancement of interacting target genes and induction of a p53-dependent cell-cycle arrest. Thus, our results ascribe transcription enhancement activity to p53 with the capacity to regulate multiple genes from a single genomic binding site. Moreover, eRNA production from p53BERs is required for efficient p53 transcription enhancement.

MeSH Terms
Cell Cycle Checkpoints/genetics Chromatin/metabolism Chromosomes, Human/metabolism Enhancer Elements, Genetic Gene Expression Regulation, Neoplastic Genes Humans MCF-7 Cells Models, Genetic Protein Binding/genetics RNA/metabolism RNA, Messenger/genetics,metabolism RNA, Untranslated/metabolism Transcription, Genetic Tumor Suppressor Protein p53/metabolism
Chemicals
Chromatin RNA, Messenger RNA, Untranslated Tumor Suppressor Protein p53 RNA
Authors & Affiliations
12 authors, click to expand affiliations / ORCID
Melo Carlos A
Division of Gene Regulation, the Netherlands Cancer Institute, Plesmanlaan 121, 1066 CX, Amsterdam, the Netherlands; Doctoral Programme in Biomedicine and Experimental Biology, Centre for Neuroscience and Cell Biology, 3004-517 Coimbra, Portugal.
Drost Jarno
Wijchers Patrick J
van de Werken Harmen
de Wit Elzo
Oude Vrielink Joachim A F
Elkon Ran
Melo Sónia A
Léveillé Nicolas
Kalluri Raghu
de Laat Wouter
Agami Reuven
Article Info
Journal
Molecular cell
Abbr.
Mol Cell
ISSN
1097-4164
Published
2013-02-07
Epub
2012-00-27
Pages
524-35
Language
English
Region
United States
NLM ID
9802571
Subset
IM
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