Home LiteratureArticle Details
PMID: 23241849 Published · ppublish English Journal Article Research Support, Non-U.S. Gov't Review

RNase E: at the interface of bacterial RNA processing and decay.

Nature reviews. Microbiology ·Vol. 11 ·No. 1 ·2013-01-00 ·Pages 45-57

Mackie GA

Abstract

RNase E is an essential endonuclease that is abundant in many bacteria and plays an important part in all aspects of RNA metabolism. It functions as part of a large macromolecular complex known as the RNA degradosome. Recent evidence suggests that this complex associates with the inner membrane of bacteria, an observation that challenges traditional models in which soluble RNases are proposed to randomly interact with RNAs in the cytosol. In this Review, I summarize the major roles of RNase E in RNA processing and decay and discuss the various mechanisms that regulate its activity. I also propose a new model to rationalize the mechanism of RNase E action in the context of its localization in the bacterial cell.

MeSH Terms
Bacteria/enzymology Endoribonucleases/metabolism Gene Expression Regulation, Bacterial Gene Expression Regulation, Enzymologic Models, Biological Models, Molecular RNA Processing, Post-Transcriptional RNA Stability RNA, Bacterial/metabolism
Chemicals
RNA, Bacterial Endoribonucleases ribonuclease E
Authors & Affiliations
1 authors, click to expand affiliations / ORCID
Mackie George A
Department of Biochemistry and Molecular Biology, Life Sciences Centre, The University of British Columbia, Vancouver, British Columbia V6T 1Z3, Canada. george.mackie@ubc.ca
References (131)
131 references, click to expand
  1. Site-specific RNase E cleavage of oligonucleotides and inhibition by stem-loops.
    Nature. 1995 Mar 16;374(6519):287-90 PMID: 7533896
  2. Studies of the RNA degradosome-organizing domain of the Escherichia coli ribonuclease RNase E.
    J Mol Biol. 2004 Jul 23;340(5):965-79 PMID: 15236960
  3. Ribonuclease E organizes the protein interactions in the Escherichia coli RNA degradosome.
    Genes Dev. 1998 Sep 1;12(17):2770-81 PMID: 9732274
  4. Function in Escherichia coli of the non-catalytic part of RNase E: role in the degradation of ribosome-free mRNA.
    Mol Microbiol. 2002 Sep;45(5):1231-43 PMID: 12207692
  5. Complementary sequences 1700 nucleotides apart form a ribonuclease III cleavage site in Escherichia coli ribosomal precursor RNA.
    Proc Natl Acad Sci U S A. 1978 Aug;75(8):3593-7 PMID: 358189
  6. Autoregulation allows Escherichia coli RNase E to adjust continuously its synthesis to that of its substrates.
    Mol Microbiol. 2001 Nov;42(3):867-78 PMID: 11722748
  7. The crystal structure of the Escherichia coli RNase E apoprotein and a mechanism for RNA degradation.
    Structure. 2008 Aug 6;16(8):1238-44 PMID: 18682225
  8. Spatiotemporal patterns and transcription kinetics of induced RNA in single bacterial cells.
    Proc Natl Acad Sci U S A. 2009 Sep 22;106(38):16399-404 PMID: 19805311
  9. Spatial organization of the flow of genetic information in bacteria.
    Nature. 2010 Jul 1;466(7302):77-81 PMID: 20562858
  10. Differential modulation of E. coli mRNA abundance by inhibitory proteins that alter the composition of the degradosome.
    Mol Microbiol. 2006 Jul;61(2):394-406 PMID: 16771842
  11. Consequences of RNase E scarcity in Escherichia coli.
    Mol Microbiol. 2002 Feb;43(4):1053-64 PMID: 11929550
  12. Structure of Escherichia coli RNase E catalytic domain and implications for RNA turnover.
    Nature. 2005 Oct 20;437(7062):1187-91 PMID: 16237448
  13. Ectopic RNase E sites promote bypass of 5'-end-dependent mRNA decay in Escherichia coli.
    Mol Microbiol. 2003 Jan;47(1):75-88 PMID: 12492855
  14. The vacB gene required for virulence in Shigella flexneri and Escherichia coli encodes the exoribonuclease RNase R.
    J Biol Chem. 1998 Jun 5;273(23):14077-80 PMID: 9603904
  15. Molecular recognition between Escherichia coli enolase and ribonuclease E.
    Acta Crystallogr D Biol Crystallogr. 2010 Sep;66(Pt 9):1036-40 PMID: 20823555
  16. An evolutionarily conserved RNA stem-loop functions as a sensor that directs feedback regulation of RNase E gene expression.
    Genes Dev. 2000 May 15;14(10):1249-60 PMID: 10817759
  17. The poly(A) binding protein Hfq protects RNA from RNase E and exoribonucleolytic degradation.
    Nucleic Acids Res. 2003 Dec 15;31(24):7302-10 PMID: 14654705
  18. RNase K: one less letter in the alphabet soup.
    Mol Microbiol. 1995 Aug;17(3):595-6 PMID: 8559077
  19. RNase E, an RNA processing enzyme from Escherichia coli.
    J Biol Chem. 1979 Nov 10;254(21):11154-9 PMID: 387765
  20. Degradation of RNA in bacteria: comparison of mRNA and stable RNA.
    Nucleic Acids Res. 2006 Feb 01;34(2):659-66 PMID: 16452296
  21. Regulatory RNAs in bacteria.
    Cell. 2009 Feb 20;136(4):615-28 PMID: 19239884
  22. Bacteriophage T7 protein kinase phosphorylates RNase E and stabilizes mRNAs synthesized by T7 RNA polymerase.
    Mol Microbiol. 2001 Nov;42(3):767-76 PMID: 11722741
  23. RNase E-based ribonucleoprotein complexes: mechanical basis of mRNA destabilization mediated by bacterial noncoding RNAs.
    Genes Dev. 2005 Sep 15;19(18):2176-86 PMID: 16166379
  24. RNase E autoregulates its synthesis in Escherichia coli by binding directly to a stem-loop in the rne 5' untranslated region.
    Mol Microbiol. 2009 Apr;72(2):470-8 PMID: 19320830
  25. Co-variation of tRNA abundance and codon usage in Escherichia coli at different growth rates.
    J Mol Biol. 1996 Aug 2;260(5):649-63 PMID: 8709146
  26. Poly(A) polymerase I of Escherichia coli: characterization of the catalytic domain, an RNA binding site and regions for the interaction with proteins involved in mRNA degradation.
    Mol Microbiol. 1999 May;32(4):765-75 PMID: 10361280
  27. Two pathways for RNase E action in Escherichia coli in vivo and bypass of its essentiality in mutants defective for Rho-dependent transcription termination.
    Mol Microbiol. 2011 Dec;82(6):1330-48 PMID: 22026368
  28. An important role for RNase R in mRNA decay.
    Mol Cell. 2005 Jan 21;17(2):313-8 PMID: 15664199
  29. Recognition of enolase in the Escherichia coli RNA degradosome.
    J Mol Biol. 2006 Apr 21;358(1):8-15 PMID: 16516921
  30. The CafA protein required for the 5'-maturation of 16 S rRNA is a 5'-end-dependent ribonuclease that has context-dependent broad sequence specificity.
    J Biol Chem. 2000 Mar 24;275(12):8726-32 PMID: 10722715
  31. Control of functional mRNA stability in bacteria: multiple mechanisms of nucleolytic and non-nucleolytic inactivation.
    Mol Microbiol. 1992 Feb;6(3):277-82 PMID: 1372674
  32. RNase E autoregulates its synthesis by controlling the degradation rate of its own mRNA in Escherichia coli: unusual sensitivity of the rne transcript to RNase E activity.
    Genes Dev. 1995 Jan 1;9(1):84-96 PMID: 7530223
  33. Enzymatic basis for hydrolytic versus phosphorolytic mRNA degradation in Escherichia coli and Bacillus subtilis.
    Proc Natl Acad Sci U S A. 1991 Apr 15;88(8):3277-80 PMID: 1707536
  34. Quaternary structure and catalytic activity of the Escherichia coli ribonuclease E amino-terminal catalytic domain.
    Biochemistry. 2003 Dec 2;42(47):13848-55 PMID: 14636052
  35. Control of RNase E-mediated RNA degradation by 5'-terminal base pairing in E. coli.
    Nature. 1992 Dec 3;360(6403):488-91 PMID: 1280335
  36. The RNase E of Escherichia coli is a membrane-binding protein.
    Mol Microbiol. 2008 Nov;70(4):799-813 PMID: 18976283
  37. Regulation of RraA, a protein inhibitor of RNase E-mediated RNA decay.
    J Bacteriol. 2006 May;188(9):3257-63 PMID: 16621818
  38. Initiation of tRNA maturation by RNase E is essential for cell viability in E. coli.
    Genes Dev. 2002 May 1;16(9):1102-15 PMID: 12000793
  39. Endonucleolytic initiation of mRNA decay in Escherichia coli.
    Prog Mol Biol Transl Sci. 2009;85:91-135 PMID: 19215771
  40. Unraveling new roles for minor components of the E. coli RNA degradosome.
    RNA Biol. 2009 Sep-Oct;6(4):402-5 PMID: 19667755
  41. RNase Z in Escherichia coli plays a significant role in mRNA decay.
    Mol Microbiol. 2006 May;60(3):723-37 PMID: 16629673
  42. Regulation of ribonuclease E activity by the L4 ribosomal protein of Escherichia coli.
    Proc Natl Acad Sci U S A. 2009 Jan 20;106(3):864-9 PMID: 19144914
  43. Physical and functional interactions among RNase E, polynucleotide phosphorylase and the cold-shock protein, CsdA: evidence for a 'cold shock degradosome'.
    Mol Microbiol. 2004 Dec;54(5):1409-21 PMID: 15554978
  44. The poly(A)-dependent degradation pathway of rpsO mRNA is primarily mediated by RNase R.
    RNA. 2009 Feb;15(2):316-26 PMID: 19103951
  45. Reconstitution and analysis of the multienzyme Escherichia coli RNA degradosome.
    J Mol Biol. 2008 Oct 17;382(4):870-83 PMID: 18691600
  46. Involvement of the Escherichia coli endoribonucleases G and E in the secondary processing of RegB-cleaved transcripts of bacteriophage T4.
    Virology. 2008 Jun 5;375(2):342-53 PMID: 18395239
  47. The RNA degradosome and poly(A) polymerase of Escherichia coli are required in vivo for the degradation of small mRNA decay intermediates containing REP-stabilizers.
    Mol Microbiol. 2004 Feb;51(3):777-90 PMID: 14731278
  48. Degradation of RNA in Escherichia coli. A hypothesis.
    Mol Gen Genet. 1973 May 28;122(4):313-22 PMID: 4577538
  49. Structural analysis and in vitro processing to p5 rRNA of a 9S RNA molecule isolated from an rne mutant of E. coli.
    Cell. 1978 Nov;15(3):1055-66 PMID: 365352
  50. Polyphosphate kinase is a component of the Escherichia coli RNA degradosome.
    Mol Microbiol. 1997 Oct;26(2):387-98 PMID: 9383162
  51. Lost in translation: the influence of ribosomes on bacterial mRNA decay.
    Genes Dev. 2005 Nov 1;19(21):2526-33 PMID: 16264189
  52. Processing enzyme ribonuclease E specifically cleaves RNA I. An inhibitor of primer formation in plasmid DNA synthesis.
    J Mol Biol. 1985 Oct 20;185(4):713-20 PMID: 2414455
  53. Global analysis of mRNA decay and abundance in Escherichia coli at single-gene resolution using two-color fluorescent DNA microarrays.
    Proc Natl Acad Sci U S A. 2002 Jul 23;99(15):9697-702 PMID: 12119387
  54. Degradation of FinP antisense RNA from F-like plasmids: the RNA-binding protein, FinO, protects FinP from ribonuclease E.
    J Mol Biol. 1999 Jan 29;285(4):1457-73 PMID: 9917389
  55. Intermediates and time kinetics of the in vivo assembly of Escherichia coli ribosomes.
    J Mol Biol. 1975 Feb 15;92(1):15-37 PMID: 1097701
  56. Hfq and its constellation of RNA.
    Nat Rev Microbiol. 2011 Aug 15;9(8):578-89 PMID: 21760622
  57. Role of Escherichia coli YbeY, a highly conserved protein, in rRNA processing.
    Mol Microbiol. 2010 Oct;78(2):506-18 PMID: 20807199
  58. Post-transcriptional control of Crp-cAMP by RNase LS in Escherichia coli.
    Mol Microbiol. 2008 Dec;70(6):1570-8 PMID: 19019153
  59. RNase E plays an essential role in the maturation of Escherichia coli tRNA precursors.
    RNA. 2002 Jan;8(1):97-109 PMID: 11871663
  60. Coupled degradation of a small regulatory RNA and its mRNA targets in Escherichia coli.
    Genes Dev. 2003 Oct 1;17(19):2374-83 PMID: 12975324
  61. Oligoribonuclease is an essential component of the mRNA decay pathway.
    Proc Natl Acad Sci U S A. 1999 Apr 13;96(8):4372-7 PMID: 10200269
  62. Effects of nucleoid-associated proteins on bacterial chromosome structure and gene expression.
    Curr Opin Microbiol. 2010 Dec;13(6):773-80 PMID: 20951079
  63. Ribonuclease E is a 5'-end-dependent endonuclease.
    Nature. 1998 Oct 15;395(6703):720-3 PMID: 9790196
  64. RNase G complementation of rne null mutation identifies functional interrelationships with RNase E in Escherichia coli.
    Mol Microbiol. 2002 Mar;43(6):1445-56 PMID: 11952897
  65. A DEAD-box RNA helicase in the Escherichia coli RNA degradosome.
    Nature. 1996 May 9;381(6578):169-72 PMID: 8610017
  66. Exoribonuclease and endoribonuclease activities of RNase BN/RNase Z both function in vivo.
    J Biol Chem. 2012 Oct 12;287(42):35747-35755 PMID: 22893707
  67. Function, mechanism and regulation of bacterial ribonucleases.
    FEMS Microbiol Rev. 1999 Jun;23(3):371-90 PMID: 10371039
  68. RNA degradation in Bacillus subtilis: an interplay of essential endo- and exoribonucleases.
    Mol Microbiol. 2012 Jun;84(6):1005-17 PMID: 22568516
  69. Catalytic activation of multimeric RNase E and RNase G by 5'-monophosphorylated RNA.
    Proc Natl Acad Sci U S A. 2004 Jun 22;101(25):9211-6 PMID: 15197283
  70. Structural basis for 5'-end-specific recognition of guide RNA by the A. fulgidus Piwi protein.
    Nature. 2005 Mar 31;434(7033):666-70 PMID: 15800629
  71. Global RNA half-life analysis in Escherichia coli reveals positional patterns of transcript degradation.
    Genome Res. 2003 Feb;13(2):216-23 PMID: 12566399
  72. RNaseE and the other constituents of the RNA degradosome are components of the bacterial cytoskeleton.
    Proc Natl Acad Sci U S A. 2007 Jan 30;104(5):1667-72 PMID: 17242352
  73. RNaseE and RNA helicase B play central roles in the cytoskeletal organization of the RNA degradosome.
    J Biol Chem. 2008 May 16;283(20):13850-5 PMID: 18337249
  74. Analysis of the Escherichia coli RNA degradosome composition by a proteomic approach.
    Biochimie. 2006 Feb;88(2):151-61 PMID: 16139413
  75. Cleavage of poly(A) tails on the 3'-end of RNA by ribonuclease E of Escherichia coli.
    Nucleic Acids Res. 2001 May 1;29(9):1864-71 PMID: 11328869
  76. RNA degradosomes exist in vivo in Escherichia coli as multicomponent complexes associated with the cytoplasmic membrane via the N-terminal region of ribonuclease E.
    Proc Natl Acad Sci U S A. 2001 Jan 2;98(1):63-8 PMID: 11134527
  77. The RNase E of Escherichia coli has at least two binding sites for DEAD-box RNA helicases: functional replacement of RhlB by RhlE.
    Mol Microbiol. 2004 Dec;54(5):1422-30 PMID: 15554979
  78. Maturation of 23S ribosomal RNA requires the exoribonuclease RNase T.
    RNA. 1999 Jan;5(1):139-46 PMID: 9917073
  79. In the absence of translation, RNase E can bypass 5' mRNA stabilizers in Escherichia coli.
    J Mol Biol. 1998 Sep 18;282(2):241-54 PMID: 9735284
  80. Characterization of an Escherichia coli elaC deletion mutant.
    Biochem Biophys Res Commun. 2004 Aug 6;320(4):1365-73 PMID: 15303284
  81. Superresolution imaging of ribosomes and RNA polymerase in live Escherichia coli cells.
    Mol Microbiol. 2012 Jul;85(1):21-38 PMID: 22624875
  82. Regions of RNase E important for 5'-end-dependent RNA cleavage and autoregulated synthesis.
    J Bacteriol. 2000 May;182(9):2468-75 PMID: 10762247
  83. Maturation and degradation of RNA in bacteria.
    Curr Opin Microbiol. 2007 Jun;10(3):271-8 PMID: 17560162
  84. "Zn-link": a metal-sharing interface that organizes the quaternary structure and catalytic site of the endoribonuclease, RNase E.
    Biochemistry. 2005 Mar 29;44(12):4667-75 PMID: 15779893
  85. Regulation by small RNAs in bacteria: expanding frontiers.
    Mol Cell. 2011 Sep 16;43(6):880-91 PMID: 21925377
  86. Mutants of the RNA-processing enzyme RNase E reverse the extreme slow-growth phenotype caused by a mutant translation factor EF-Tu.
    Mol Microbiol. 2008 Dec;70(5):1194-209 PMID: 18990188
  87. Crystal structure of Escherichia coli polynucleotide phosphorylase core bound to RNase E, RNA and manganese: implications for catalytic mechanism and RNA degradosome assembly.
    J Mol Biol. 2009 May 29;389(1):17-33 PMID: 19327365
  88. Substrate binding and active site residues in RNases E and G: role of the 5'-sensor.
    J Biol Chem. 2009 Nov 13;284(46):31843-50 PMID: 19778900
  89. RNase G-dependent degradation of the eno mRNA encoding a glycolysis enzyme enolase in Escherichia coli.
    Biosci Biotechnol Biochem. 2002 Oct;66(10):2216-20 PMID: 12450135
  90. Poly(A)- and poly(U)-specific RNA 3' tail shortening by E. coli ribonuclease E.
    Nature. 1998 Jan 1;391(6662):99-102 PMID: 9422514
  91. Roles of the 5'-phosphate sensor domain in RNase E.
    Mol Microbiol. 2011 Jun;80(6):1613-24 PMID: 21518390
  92. The RNase E/G-type endoribonuclease of higher plants is located in the chloroplast and cleaves RNA similarly to the E. coli enzyme.
    RNA. 2008 Jun;14(6):1057-68 PMID: 18441049
  93. RraA. a protein inhibitor of RNase E activity that globally modulates RNA abundance in E. coli.
    Cell. 2003 Sep 5;114(5):623-34 PMID: 13678585
  94. The phylogenetic distribution of bacterial ribonucleases.
    Nucleic Acids Res. 2002 Dec 15;30(24):5339-46 PMID: 12490701
  95. Riboregulation in Escherichia coli: DsrA RNA acts by RNA:RNA interactions at multiple loci.
    Proc Natl Acad Sci U S A. 1998 Oct 13;95(21):12456-61 PMID: 9770507
  96. The seed region of a small RNA drives the controlled destruction of the target mRNA by the endoribonuclease RNase E.
    Mol Cell. 2012 Sep 28;47(6):943-53 PMID: 22902561
  97. A phylogenetic view of bacterial ribonucleases.
    Prog Mol Biol Transl Sci. 2009;85:1-41 PMID: 19215769
  98. The regulatory protein RraA modulates RNA-binding and helicase activities of the E. coli RNA degradosome.
    RNA. 2010 Mar;16(3):553-62 PMID: 20106955
  99. Cellular electron microscopy imaging reveals the localization of the Hfq protein close to the bacterial membrane.
    PLoS One. 2009 Dec 14;4(12):e8301 PMID: 20011543
  100. Copurification of E. coli RNAase E and PNPase: evidence for a specific association between two enzymes important in RNA processing and degradation.
    Cell. 1994 Mar 11;76(5):889-900 PMID: 7510217
  101. Escherichia coli RNase M is a multiply altered form of RNase I.
    RNA. 2001 Dec;7(12):1702-7 PMID: 11780627
  102. Proteins associated with RNase E in a multicomponent ribonucleolytic complex.
    Proc Natl Acad Sci U S A. 1996 Apr 30;93(9):3865-9 PMID: 8632981
  103. DsrA RNA regulates translation of RpoS message by an anti-antisense mechanism, independent of its action as an antisilencer of transcription.
    Proc Natl Acad Sci U S A. 1998 Oct 13;95(21):12462-7 PMID: 9770508
  104. Escherichia coli endoribonuclease RNase E: autoregulation of expression and site-specific cleavage of mRNA.
    Mol Microbiol. 1993 Aug;9(3):557-68 PMID: 8412702
  105. Processing of unstable bacteriophage T4 gene 32 mRNAs into a stable species requires Escherichia coli ribonuclease E.
    EMBO J. 1988 Nov;7(11):3601-7 PMID: 3061803
  106. Reconstitution of a minimal RNA degradosome demonstrates functional coordination between a 3' exonuclease and a DEAD-box RNA helicase.
    Genes Dev. 1999 Oct 1;13(19):2594-603 PMID: 10521403
  107. Action of RNase II and polynucleotide phosphorylase against RNAs containing stem-loops of defined structure.
    J Bacteriol. 2000 May;182(9):2422-7 PMID: 10762241
  108. RNase E polypeptides lacking a carboxyl-terminal half suppress a mukB mutation in Escherichia coli.
    J Bacteriol. 1996 Jul;178(13):3917-25 PMID: 8682798
  109. The helical MreB cytoskeleton in Escherichia coli MC1000/pLE7 is an artifact of the N-Terminal yellow fluorescent protein tag.
    J Bacteriol. 2012 Dec;194(23):6382-6 PMID: 22904287
  110. Of proteins and RNA: the RNase P/MRP family.
    RNA. 2010 Sep;16(9):1725-47 PMID: 20627997
  111. Location of the RNA-processing enzymes RNase III, RNase E and RNase P in the Escherichia coli cell.
    Mol Microbiol. 1991 Jul;5(7):1801-10 PMID: 1943711
  112. Novel activities of glycolytic enzymes in Bacillus subtilis: interactions with essential proteins involved in mRNA processing.
    Mol Cell Proteomics. 2009 Jun;8(6):1350-60 PMID: 19193632
  113. RNase E levels in Escherichia coli are controlled by a complex regulatory system that involves transcription of the rne gene from three promoters.
    Mol Microbiol. 2002 Jan;43(1):159-71 PMID: 11849544
  114. Ribonuclease E provides substrates for ribonuclease P-dependent processing of a polycistronic mRNA.
    Genes Dev. 1994 Dec 15;8(24):3021-31 PMID: 8001821
  115. Single amino acid changes in the predicted RNase H domain of Escherichia coli RNase G lead to complementation of RNase E deletion mutants.
    RNA. 2010 Jul;16(7):1371-85 PMID: 20507976
  116. Bacteriophage T4 polynucleotide kinase triggers degradation of mRNAs.
    Proc Natl Acad Sci U S A. 2012 May 1;109(18):7073-8 PMID: 22499790
  117. Membrane binding of Escherichia coli RNase E catalytic domain stabilizes protein structure and increases RNA substrate affinity.
    Proc Natl Acad Sci U S A. 2012 May 1;109(18):7019-24 PMID: 22509045
  118. The role of RNA structure in determining RNase E-dependent cleavage sites in the mRNA for ribosomal protein S20 in vitro.
    J Mol Biol. 1993 Dec 20;234(4):998-1012 PMID: 7505337
  119. Recognition and cooperation between the ATP-dependent RNA helicase RhlB and ribonuclease RNase E.
    J Mol Biol. 2007 Mar 16;367(1):113-32 PMID: 17234211
  120. Secondary structure of the mRNA for ribosomal protein S20. Implications for cleavage by ribonuclease E.
    J Biol Chem. 1992 Jan 15;267(2):1054-61 PMID: 1370457
  121. Structural insights into the dual activity of RNase J.
    Nat Struct Mol Biol. 2008 Feb;15(2):206-12 PMID: 18204464
  122. Sensing of 5' monophosphate by Escherichia coli RNase G can significantly enhance association with RNA and stimulate the decay of functional mRNA transcripts in vivo.
    Mol Microbiol. 2008 Jan;67(1):102-15 PMID: 18078441
  123. Probing the substrate specificity of Escherichia coli RNase E using a novel oligonucleotide-based assay.
    Nucleic Acids Res. 2003 Aug 15;31(16):4710-6 PMID: 12907711
  124. Structural basis for 5'-nucleotide base-specific recognition of guide RNA by human AGO2.
    Nature. 2010 Jun 10;465(7299):818-22 PMID: 20505670
  125. Initiation of RNA decay in Escherichia coli by 5' pyrophosphate removal.
    Mol Cell. 2007 Jul 6;27(1):79-90 PMID: 17612492
  126. The bacterial enzyme RppH triggers messenger RNA degradation by 5' pyrophosphate removal.
    Nature. 2008 Jan 17;451(7176):355-8 PMID: 18202662
  127. Polynucleotide phosphorylase and ribonuclease II are required for cell viability and mRNA turnover in Escherichia coli K-12.
    Proc Natl Acad Sci U S A. 1986 Jan;83(1):120-4 PMID: 2417233
  128. A 5'-terminal stem-loop structure can stabilize mRNA in Escherichia coli.
    Genes Dev. 1992 Jan;6(1):135-48 PMID: 1370426
  129. Unusual, dual endo- and exonuclease activity in the degradosome explained by crystal structure analysis of RNase J1.
    Structure. 2011 Sep 7;19(9):1241-51 PMID: 21893285
  130. Functional relationship between Escherichia coli RNase E and the CafA protein.
    Mol Gen Genet. 1997 Jan 27;253(4):515-9 PMID: 9037114
  131. RNase G (CafA protein) and RNase E are both required for the 5' maturation of 16S ribosomal RNA.
    EMBO J. 1999 May 17;18(10):2878-85 PMID: 10329633
Article Info
Journal
Nature reviews. Microbiology
Abbr.
Nat Rev Microbiol
ISSN
1740-1534
Published
2013-01-00
Pages
45-57
Language
English
Region
England
NLM ID
101190261
Subset
IM
Grants
Canadian Institutes of Health Research · Canada
Analysis Services
Analysis Services

Contact

No. 2 Wenbo Road, Zhangqiu District, Jinan, Shandong

Qilu Normal University · Genelibs Bioinformatics Lab

750 Shunhua Rd, Jinan

2F, Bldg F, University Science Park

Tel: 0531-88819269

WeChat Official Account

Follow our WeChat subscription account for real-time updates and the latest in medical and biological research.


Business Email

E-mail: product@genelibs.com