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PMID: 23180798 Published · ppublish English Journal Article Research Support, N.I.H., Extramural Research Support, N.I.H., Intramural Research Support, Non-U.S. Gov't

The International Nucleotide Sequence Database Collaboration.

Nucleic acids research ·Vol. 41 ·No. Database issue ·2013-01-00 ·Pages D21-4

Nakamura Y, Cochrane G, Karsch-Mizrachi I, International Nucleotide Sequence Database Collaboration

Abstract

The International Nucleotide Sequence Database Collaboration (INSDC; http://www.insdc.org), one of the longest-standing global alliances of biological data archives, captures, preserves and provides comprehensive public domain nucleotide sequence information. Three partners of the INSDC work in cooperation to establish formats for data and metadata and protocols that facilitate reliable data submission to their databases and support continual data exchange around the world. In this article, the INSDC current status and update for the year of 2012 are presented. Among discussed items of international collaboration meeting in 2012, BioSample database and changes in submission are described as topics.

MeSH Terms
Base Sequence Databases, Nucleic Acid Genomics Internet Molecular Sequence Annotation
Authors & Affiliations
4 authors, click to expand affiliations / ORCID
Nakamura Yasukazu
DDBJ Center, National Institute of Genetics, Research Organization for Information and Systems, Yata, Mishima 411-8510, Japan. yn@nig.ac.jp
Cochrane Guy
Karsch-Mizrachi Ilene
International Nucleotide Sequence Database Collaboration
References (7)
7 references, click to expand
  1. Major submissions tool developments at the European Nucleotide Archive.
    Nucleic Acids Res. 2012 Jan;40(Database issue):D43-7 PMID: 22080548
  2. The Sequence Read Archive: explosive growth of sequencing data.
    Nucleic Acids Res. 2012 Jan;40(Database issue):D54-6 PMID: 22009675
  3. The DNA Data Bank of Japan launches a new resource, the DDBJ Omics Archive of functional genomics experiments.
    Nucleic Acids Res. 2012 Jan;40(Database issue):D38-42 PMID: 22110025
  4. GenBank.
    Nucleic Acids Res. 2012 Jan;40(Database issue):D48-53 PMID: 22144687
  5. The BioSample Database (BioSD) at the European Bioinformatics Institute.
    Nucleic Acids Res. 2012 Jan;40(Database issue):D64-70 PMID: 22096232
  6. BioProject and BioSample databases at NCBI: facilitating capture and organization of metadata.
    Nucleic Acids Res. 2012 Jan;40(Database issue):D57-63 PMID: 22139929
  7. The International Nucleotide Sequence Database Collaboration.
    Nucleic Acids Res. 2012 Jan;40(Database issue):D33-7 PMID: 22080546
Article Info
Journal
Nucleic acids research
Abbr.
Nucleic Acids Res
ISSN
1362-4962
DOI
10.1093/nar/gks1084
Email
yn@nig.ac.jp
Published
2013-01-00
Epub
2012-00-24
Pages
D21-4
Language
English
Region
England
NLM ID
0411011
PMCID
PMC3531182
Subset
IM
Grants
Wellcome Trust · 085532 · United Kingdom
Intramural NIH HHS · United States
Biotechnology and Biological Sciences Research Council · United Kingdom
External Links
PubMed source DOI: 10.1093/nar/gks1084 PMC Full Text View journal details
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