Home LiteratureArticle Details
PMID: 23101585 Published · epublish English Journal Article

Isotope Coded Protein Labeling analysis of plasma specimens from acute severe dengue fever patients.

Proteome science ·Vol. 10 ·No. 1 ·2012-10-26 ·Pages 60

Fragnoud R, Yugueros-Marcos J, Pachot A, Bedin F

Abstract

Dengue fever is the most important arthropod born viral disease of public health significance. Although most patients suffer only from flu-like symptoms, a small group of patient experiences more severe forms of the disease. To contribute to a better understanding of its pathogenesis this study aims to identify proteins differentially expressed in a pool of five viremic plasma from severe dengue patients relative to a pool of five non-severe dengue patients. The use of Isotope Coded Protein Labeling (ICPLTM) to analyze plasma depleted of twenty high-abundance proteins allowed for the identification of 51 differentially expressed proteins, which were characterized by mass spectrometry. Using quantitative ELISA, three of these proteins (Leucine-rich glycoprotein 1, Vitamin D binding-protein and Ferritin) were confirmed as having an increased expression in a panel of severe dengue plasma. The proteins identified as overexpressed by ICPLTM in severe dengue plasma involve in clear up action after cell injury, tissue coherence and immune defense. This ICPLTM study evaluating differences between acute severe dengue plasmas and acute non-severe dengue plasmas suggests that the three proteins identified are overexpressed early in the course of the disease. Their possible use as biomarkers for the prognostic of disease severity is discussed.

Authors & Affiliations
4 authors, click to expand affiliations / ORCID
Fragnoud Romain
BioMérieux SA, Chemin de l'Orme, 69280, Marcy l'Etoile, France. frederic.bedin@biomerieux.com.
Yugueros-Marcos Javier
Pachot Alexandre
Bedin Frederic
References (41)
41 references, click to expand
  1. Genome-wide expression profiling deciphers host responses altered during dengue shock syndrome and reveals the role of innate immunity in severe dengue.
    PLoS One. 2010 Jul 20;5(7):e11671 PMID: 20652028
  2. Impact of clostridial glucosylating toxins on the proteome of colonic cells determined by isotope-coded protein labeling and LC-MALDI.
    Proteome Sci. 2011 Aug 17;9:48 PMID: 21849038
  3. Serum leucine-rich alpha-2-glycoprotein-1 binds cytochrome c and inhibits antibody detection of this apoptotic marker in enzyme-linked immunosorbent assay.
    Apoptosis. 2006 Jul;11(7):1121-9 PMID: 16699948
  4. Gene expression profiling of mucosal addressin cell adhesion molecule-1+ high endothelial venule cells (HEV) and identification of a leucine-rich HEV glycoprotein as a HEV marker.
    J Immunol. 2002 Feb 1;168(3):1050-9 PMID: 11801638
  5. Super-SILAC mix for quantitative proteomics of human tumor tissue.
    Nat Methods. 2010 May;7(5):383-5 PMID: 20364148
  6. Proteomic analysis of coronary sinus serum reveals leucine-rich α2-glycoprotein as a novel biomarker of ventricular dysfunction and heart failure.
    Circ Heart Fail. 2011 Mar;4(2):188-97 PMID: 21282491
  7. Crystal structures of the vitamin D-binding protein and its complex with actin: structural basis of the actin-scavenger system.
    Proc Natl Acad Sci U S A. 2002 Jun 11;99(12):8003-8 PMID: 12048248
  8. Differential gene expression changes in children with severe dengue virus infections.
    PLoS Negl Trop Dis. 2008 Apr 09;2(4):e215 PMID: 18398488
  9. Kinetics of dengue virus-specific serum immunoglobulin classes and subclasses correlate with clinical outcome of infection.
    J Clin Microbiol. 2001 Dec;39(12):4332-8 PMID: 11724841
  10. The burden of dengue infection.
    Lancet. 2007 Apr 28;369(9571):1410-1411 PMID: 17467495
  11. A toolbox for validation of mass spectrometry peptides identification and generation of database: IRMa.
    Bioinformatics. 2009 Aug 1;25(15):1980-1 PMID: 19420053
  12. [Brazil, land of choice for arbovirosis?].
    Med Trop (Mars). 2007 Jun;67(3):281-7 PMID: 17784683
  13. ICPL labeling strategies for proteome research.
    Methods Mol Biol. 2011;753:55-64 PMID: 21604115
  14. The use of two-dimension electrophoresis to identify serum biomarkers from patients with dengue haemorrhagic fever.
    Trans R Soc Trop Med Hyg. 2009 Apr;103(4):413-9 PMID: 19203772
  15. Protein alterations associated with pancreatic cancer and chronic pancreatitis found in human plasma using global quantitative proteomics profiling.
    J Proteome Res. 2011 May 6;10(5):2359-76 PMID: 21443201
  16. Proteomic analysis of human serum for finding pathogenic factors and potential biomarkers in preeclampsia.
    Placenta. 2011 Feb;32(2):168-74 PMID: 21145106
  17. Serum and plasma proteomics.
    Chem Rev. 2007 Aug;107(8):3601-20 PMID: 17636887
  18. Discovery proteomics and nonparametric modeling pipeline in the development of a candidate biomarker panel for dengue hemorrhagic fever.
    Clin Transl Sci. 2012 Feb;5(1):8-20 PMID: 22376251
  19. Allergies and diabetes as risk factors for dengue hemorrhagic fever: results of a case control study.
    PLoS Negl Trop Dis. 2010 Jun 01;4(6):e699 PMID: 20532230
  20. Serum ferritin levels in children with dengue infection.
    Southeast Asian J Trop Med Public Health. 2008 Sep;39(5):832-6 PMID: 19058577
  21. Vascular leakage in severe dengue virus infections: a potential role for the nonstructural viral protein NS1 and complement.
    J Infect Dis. 2006 Apr 15;193(8):1078-88 PMID: 16544248
  22. Gene expression patterns of dengue virus-infected children from nicaragua reveal a distinct signature of increased metabolism.
    PLoS Negl Trop Dis. 2010 Jun 15;4(6):e710 PMID: 20559541
  23. Quantification of proteins by label-free LC-MS/MS.
    Methods Mol Biol. 2010;658:217-31 PMID: 20839107
  24. The vitamin D-binding protein, alpha-fetoprotein, albumin multigene family: detection of transcripts in multiple tissues.
    J Biol Chem. 1989 Dec 25;264(36):21760-9 PMID: 2480956
  25. Depletion of one, six, twelve or twenty major blood proteins before proteomic analysis: the more the better?
    J Proteomics. 2009 Aug 20;72(6):945-51 PMID: 19341827
  26. The differences of clinical manifestations and laboratory findings in children and adults with dengue virus infection.
    J Clin Virol. 2007 Jun;39(2):76-81 PMID: 17507286
  27. Accumulation and translation of ferritin heavy chain transcripts following anoxia exposure in a marine invertebrate.
    J Exp Biol. 2004 Mar;207(Pt 8):1353-60 PMID: 15010486
  28. Cytochrome c-induced lymphocyte death from the outside in: inhibition by serum leucine-rich alpha-2-glycoprotein-1.
    Apoptosis. 2010 Feb;15(2):139-52 PMID: 19851871
  29. Secreted proteome of the murine multipotent hematopoietic progenitor cell line DKmix.
    Rapid Commun Mass Spectrom. 2010 Mar 15;24(5):561-70 PMID: 20127908
  30. Mass spectrometric sequencing of proteins silver-stained polyacrylamide gels.
    Anal Chem. 1996 Mar 1;68(5):850-8 PMID: 8779443
  31. The response of ferritin to LPS and acute phase of Pseudomonas infection.
    J Endotoxin Res. 2005;11(5):267-80 PMID: 16262999
  32. Crystal structure of the complex between actin and human vitamin D-binding protein at 2.5 A resolution.
    Biochemistry. 2002 Jul 23;41(29):9015-20 PMID: 12119014
  33. Ferritin and the response to oxidative stress.
    Biochem J. 2001 Jul 1;357(Pt 1):241-7 PMID: 11415455
  34. Complement and dengue haemorrhagic fever/shock syndrome.
    Southeast Asian J Trop Med Public Health. 1987 Sep;18(3):316-20 PMID: 3501613
  35. Expression of cytokine, chemokine, and adhesion molecules during endothelial cell activation induced by antibodies against dengue virus nonstructural protein 1.
    J Immunol. 2005 Jan 1;174(1):395-403 PMID: 15611263
  36. The dengue virus nonstructural-1 protein (NS1) generates antibodies to common epitopes on human blood clotting, integrin/adhesin proteins and binds to human endothelial cells: potential implications in haemorrhagic fever pathogenesis.
    Arch Virol. 1997;142(5):897-916 PMID: 9191856
  37. ICPL--isotope-coded protein label.
    Methods Mol Biol. 2008;424:113-23 PMID: 18369857
  38. Two-dimensional difference gel electrophoresis (DiGE) analysis of plasmas from dengue fever patients.
    J Proteome Res. 2009 Dec;8(12):5431-41 PMID: 19845402
  39. Molecular characterization and expression analysis of leucine-rich alpha2-glycoprotein, a novel marker of granulocytic differentiation.
    J Leukoc Biol. 2002 Sep;72(3):478-85 PMID: 12223515
  40. A novel strategy for quantitative proteomics using isotope-coded protein labels.
    Proteomics. 2005 Jan;5(1):4-15 PMID: 15602776
  41. Exploring the human plasma proteome.
    Proteomics. 2005 Aug;5(13):3223, 3225 PMID: 16104055
Article Info
Journal
Proteome science
Abbr.
Proteome Sci
ISSN
1477-5956
Published
2012-10-26
Epub
2012-00-26
Pages
60
Language
English
Region
England
NLM ID
101170539
PMCID
PMC3547721
Analysis Services
Analysis Services

Contact

No. 2 Wenbo Road, Zhangqiu District, Jinan, Shandong

Qilu Normal University · Genelibs Bioinformatics Lab

750 Shunhua Rd, Jinan

2F, Bldg F, University Science Park

Tel: 0531-88819269

WeChat Official Account

Follow our WeChat subscription account for real-time updates and the latest in medical and biological research.


Business Email

E-mail: product@genelibs.com