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PMID: 23045501 Published · ppublish English Journal Article Research Support, Non-U.S. Gov't

Twenty-one genome sequences from Pseudomonas species and 19 genome sequences from diverse bacteria isolated from the rhizosphere and endosphere of Populus deltoides.

Journal of bacteriology ·Vol. 194 ·No. 21 ·2012-11-00 ·Pages 5991-3

Brown SD, Utturkar SM, Klingeman DM, Johnson CM, Martin SL, Land ML, Lu TY, Schadt CW, Doktycz MJ, Pelletier DA

Abstract

To aid in the investigation of the Populus deltoides microbiome, we generated draft genome sequences for 21 Pseudomonas strains and 19 other diverse bacteria isolated from Populus deltoides roots. Genome sequences for isolates similar to Acidovorax, Bradyrhizobium, Brevibacillus, Caulobacter, Chryseobacterium, Flavobacterium, Herbaspirillum, Novosphingobium, Pantoea, Phyllobacterium, Polaromonas, Rhizobium, Sphingobium, and Variovorax were generated.

MeSH Terms

Bacteria/genetics,isolation & purification DNA, Bacterial/chemistry,genetics Endophytes/genetics,isolation & purification Genome, Bacterial Metagenome Molecular Sequence Data Plant Roots/microbiology Populus/microbiology Rhizosphere Sequence Analysis, DNA Soil Microbiology

Chemicals

DNA, Bacterial

Authors & Affiliations

10 authors, click to expand affiliations / ORCID

Brown Steven D

Biosciences Division, Oak Ridge National Laboratory, Oak Ridge, Tennessee, USA. brownsd@ornl.gov

Utturkar Sagar M

Klingeman Dawn M

Johnson Courtney M

Martin Stanton L

Land Miriam L

Lu Tse-Yuan S

Schadt Christopher W

Doktycz Mitchel J

Pelletier Dale A

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25 references, click to expand

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Article Info

Journal

Journal of bacteriology

Abbr.

J Bacteriol

ISSN

1098-5530

DOI

10.1128/JB.01243-12

brownsd@ornl.gov

Published

2012-11-00

Pages

5991-3

Language

English

Region

United States

NLM ID

2985120R

PMCID

PMC3486089

Subset

External Links

PubMed source DOI: 10.1128/JB.01243-12 PMC Full Text View journal details

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Twenty-one genome sequences from Pseudomonas species and 19 genome sequences from diverse bacteria isolated from the rhizosphere and endosphere of Populus deltoides.

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