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PMID: 22948725 Published · ppublish English Journal Article

The Human Gene Mutation Database (HGMD) and its exploitation in the fields of personalized genomics and molecular evolution.

Current protocols in bioinformatics ·Vol. Chapter 1 ·2012-09-00 ·Pages Unit1.13

Stenson PD, Ball EV, Mort M, Phillips AD, Shaw K, Cooper DN

Abstract

The Human Gene Mutation Database (HGMD) constitutes a comprehensive core collection of data on germ-line mutations in nuclear genes underlying or associated with human inherited disease (http://www.hgmd.org). Data cataloged include single-base-pair substitutions in coding, regulatory, and splicing-relevant regions, micro-deletions and micro-insertions, indels, and triplet repeat expansions, as well as gross gene deletions, insertions, duplications, and complex rearrangements. Each mutation is entered into HGMD only once, in order to avoid confusion between recurrent and identical-by-descent lesions. By March 2012, the database contained in excess of 123,600 different lesions (HGMD Professional release 2012.1) detected in 4,514 different nuclear genes, with new entries currently accumulating at a rate in excess of 10,000 per annum. ∼6,000 of these entries constitute disease-associated and functional polymorphisms. HGMD also includes cDNA reference sequences for more than 98% of the listed genes.

MeSH Terms
Databases, Factual Evolution, Molecular Genome, Human Genomics/methods Humans Mutation
Authors & Affiliations
6 authors, click to expand affiliations / ORCID
Stenson Peter D
Cardiff University, Cardiff, United Kingdom.
Ball Edward V
Mort Matthew
Phillips Andrew D
Shaw Katy
Cooper David N
Article Info
Journal
Current protocols in bioinformatics
Abbr.
Curr Protoc Bioinformatics
ISSN
1934-340X
Published
2012-09-00
Pages
Unit1.13
Language
English
Region
United States
NLM ID
101157830
Subset
IM
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