Home LiteratureArticle Details
PMID: 22897614 Published · ppublish English Journal Article Research Support, N.I.H., Extramural

Functionally important aromatic-aromatic and sulfur-π interactions in the D2 dopamine receptor.

Journal of the American Chemical Society ·Vol. 134 ·No. 36 ·2012-09-12 ·Pages 14890-6

Daeffler KN, Lester HA, Dougherty DA

Abstract

The recently published crystal structure of the D3 dopamine receptor shows a tightly packed region of aromatic residues on helices 5 and 6 in the space bridging the binding site and what is thought to be the origin of intracellular helical motion. This highly conserved region also makes contacts with residues on helix 3, and here we use double mutant cycle analysis and unnatural amino acid mutagenesis to probe the functional role of several residues in this region of the closely related D2 dopamine receptor. Of the eight mutant pairs examined, all show significant functional coupling (Ω > 2), with the largest coupling coefficients observed between residues on different helices, C3.36/W6.48, T3.37/S5.46, and F5.47/F6.52. Additionally, three aromatic residues examined, F5.47, Y5.48, and F5.51, show consistent trends upon progressive fluorination of the aromatic side chain. These trends are indicative of a functionally important electrostatic interaction with the face of the aromatic residue examined, which is likely attributed to aromatic-aromatic interactions between residues in this microdomain. We also propose that the previously determined fluorination trend at W6.48 is likely due to a sulfur-π interaction with the side chain of C3.36. We conclude that these residues form a tightly packed structural microdomain that connects helices 3, 5, and 6, thus forming a barrier that prevents dopamine from binding further toward the intracellular surface. Upon activation, these residues likely do not change their relative conformation, but rather act to translate agonist binding at the extracellular surface into the large intracellular movements that characterize receptor activation.

MeSH Terms
Amino Acids/genetics Animals Humans Hydrocarbons, Aromatic/chemistry Models, Molecular Mutagenesis Mutation Oocytes/chemistry,metabolism Receptors, Dopamine D2/chemistry,genetics,metabolism Sulfur/chemistry Xenopus laevis
Chemicals
Amino Acids Hydrocarbons, Aromatic Receptors, Dopamine D2 Sulfur
Authors & Affiliations
3 authors, click to expand affiliations / ORCID
Daeffler Kristina N-M
Division of Chemistry & Chemical Engineering, California Institute of Technology, Pasadena, California 91125, USA.
Lester Henry A
Dougherty Dennis A
References (47)
47 references, click to expand
  1. Aromatic rings in chemical and biological recognition: energetics and structures.
    Angew Chem Int Ed Engl. 2011 May 16;50(21):4808-42 PMID: 21538733
  2. Stabilizing and destabilizing effects of phenylalanine --> F5-phenylalanine mutations on the folding of a small protein.
    J Am Chem Soc. 2006 Dec 20;128(50):15932-3 PMID: 17165695
  3. Expanding the fluorous arsenal: tetrafluorinated phenylalanines for protein design.
    J Am Chem Soc. 2009 Jan 14;131(1):18-9 PMID: 19067509
  4. A conserved salt bridge critical for GABA(A) receptor function and loop C dynamics.
    Proc Natl Acad Sci U S A. 2008 Sep 9;105(36):13604-9 PMID: 18757734
  5. Crystal structure of the β2 adrenergic receptor-Gs protein complex.
    Nature. 2011 Jul 19;477(7366):549-55 PMID: 21772288
  6. Cation-pi interactions in chemistry and biology: a new view of benzene, Phe, Tyr, and Trp.
    Science. 1996 Jan 12;271(5246):163-8 PMID: 8539615
  7. Aromatic-aromatic interaction: a mechanism of protein structure stabilization.
    Science. 1985 Jul 5;229(4708):23-8 PMID: 3892686
  8. Structure of a nanobody-stabilized active state of the β(2) adrenoceptor.
    Nature. 2011 Jan 13;469(7329):175-80 PMID: 21228869
  9. A highly conserved aspartic acid (Asp-155) anchors the terminal amine moiety of tryptamines and is involved in membrane targeting of the 5-HT(2A) serotonin receptor but does not participate in activation via a "salt-bridge disruption" mechanism.
    J Pharmacol Exp Ther. 2000 Jun;293(3):735-46 PMID: 10869371
  10. From ab initio quantum mechanics to molecular neurobiology: a cation-pi binding site in the nicotinic receptor.
    Proc Natl Acad Sci U S A. 1998 Oct 13;95(21):12088-93 PMID: 9770444
  11. Contributions of aromatic pairs to the folding and stability of long-lived human γD-crystallin.
    Protein Sci. 2011 Mar;20(3):513-28 PMID: 21432932
  12. Aromatic-aromatic interactions in proteins: beyond the dimer.
    J Chem Inf Model. 2011 Jul 25;51(7):1623-33 PMID: 21662246
  13. G beta gamma binds directly to the G protein-gated K+ channel, IKACh.
    J Biol Chem. 1995 Dec 8;270(49):29059-62 PMID: 7493925
  14. Hydrophobic residues of the D2 dopamine receptor are important for binding and signal transduction.
    J Neurochem. 1995 Nov;65(5):2105-15 PMID: 7595496
  15. Non-hydrogen bond interactions involving the methionine sulfur atom.
    J Biomol Struct Dyn. 2001 Aug;19(1):115-28 PMID: 11565843
  16. Structure and function of an irreversible agonist-β(2) adrenoceptor complex.
    Nature. 2011 Jan 13;469(7329):236-40 PMID: 21228876
  17. Identification and characterization of novel properties of the human D3 dopamine receptor.
    Mol Cell Neurosci. 2004 May;26(1):144-55 PMID: 15121186
  18. Environment of tryptophan side chains in proteins.
    Proteins. 2000 Feb 15;38(3):288-300 PMID: 10713989
  19. Role of aromatic side chains in the folding and thermodynamic stability of integral membrane proteins.
    J Am Chem Soc. 2007 Jul 4;129(26):8320-7 PMID: 17564441
  20. Localized thermodynamic coupling between hydrogen bonding and microenvironment polarity substantially stabilizes proteins.
    Nat Struct Mol Biol. 2009 Jul;16(7):684-90 PMID: 19525973
  21. Structure of an agonist-bound human A2A adenosine receptor.
    Science. 2011 Apr 15;332(6027):322-7 PMID: 21393508
  22. An intersubunit hydrogen bond in the nicotinic acetylcholine receptor that contributes to channel gating.
    J Biol Chem. 2008 Dec 19;283(51):35638-43 PMID: 18952603
  23. A cation-pi binding interaction with a tyrosine in the binding site of the GABAC receptor.
    Chem Biol. 2005 Sep;12(9):993-7 PMID: 16183023
  24. Side-chain interactions between sulfur-containing amino acids and phenylalanine in alpha-helices.
    Biochemistry. 1995 Jul 11;34(27):8771-9 PMID: 7612617
  25. G-protein mediated gating of inward-rectifier K+ channels.
    Eur J Biochem. 2000 Oct;267(19):5830-6 PMID: 10998041
  26. Coupling of agonist binding to channel gating in the GABA(A) receptor.
    Nature. 2003 Jan 16;421(6920):272-5 PMID: 12529644
  27. Structure of the human dopamine D3 receptor in complex with a D2/D3 selective antagonist.
    Science. 2010 Nov 19;330(6007):1091-5 PMID: 21097933
  28. Hydrogen bonds with pi-acceptors in proteins: frequencies and role in stabilizing local 3D structures.
    J Mol Biol. 2001 Jan 19;305(3):535-57 PMID: 11152611
  29. Cation-pi interactions in ligand recognition by serotonergic (5-HT3A) and nicotinic acetylcholine receptors: the anomalous binding properties of nicotine.
    Biochemistry. 2002 Aug 13;41(32):10262-9 PMID: 12162741
  30. Sulfur, not too far behind O, N, and C: SH...pi hydrogen bond.
    J Phys Chem A. 2009 Nov 19;113(46):12774-82 PMID: 19831375
  31. Nicotinic pharmacophore: the pyridine N of nicotine and carbonyl of acetylcholine hydrogen bond across a subunit interface to a backbone NH.
    Proc Natl Acad Sci U S A. 2010 Jul 27;107(30):13206-11 PMID: 20616056
  32. A cluster of aromatic residues in the sixth membrane-spanning segment of the dopamine D2 receptor is accessible in the binding-site crevice.
    Biochemistry. 1998 Jan 27;37(4):998-1006 PMID: 9454590
  33. Probing the role of the cation-pi interaction in the binding sites of GPCRs using unnatural amino acids.
    Proc Natl Acad Sci U S A. 2009 Jul 21;106(29):11919-24 PMID: 19581583
  34. Interactions with aromatic rings in chemical and biological recognition.
    Angew Chem Int Ed Engl. 2003 Mar 17;42(11):1210-50 PMID: 12645054
  35. Mapping the binding-site crevice of the dopamine D2 receptor by the substituted-cysteine accessibility method.
    Neuron. 1995 Apr;14(4):825-31 PMID: 7718244
  36. Cloning of the gene for a human dopamine D4 receptor with high affinity for the antipsychotic clozapine.
    Nature. 1991 Apr 18;350(6319):610-4 PMID: 1840645
  37. Transducing agonist binding to channel gating involves different interactions in 5-HT3 and GABAC receptors.
    J Biol Chem. 2007 Aug 31;282(35):25623-30 PMID: 17606617
  38. The structure and function of G-protein-coupled receptors.
    Nature. 2009 May 21;459(7245):356-63 PMID: 19458711
  39. Evidence that neuronal G-protein-gated inwardly rectifying K+ channels are activated by G beta gamma subunits and function as heteromultimers.
    Proc Natl Acad Sci U S A. 1995 Jul 3;92(14):6542-6 PMID: 7604029
  40. Hydrophobic core repacking and aromatic-aromatic interaction in the thermostable mutant of T4 lysozyme Ser 117-->Phe.
    Protein Sci. 1993 Aug;2(8):1285-90 PMID: 8401213
  41. In vivo incorporation of unnatural amino acids into ion channels in Xenopus oocyte expression system.
    Methods Enzymol. 1998;293:504-29 PMID: 9711626
  42. The Cationminus signpi Interaction.
    Chem Rev. 1997 Aug 5;97(5):1303-1324 PMID: 11851453
  43. Estimates of the ab initio limit for sulfur-pi interactions: the H2S-benzene dimer.
    J Phys Chem A. 2005 Jan 13;109(1):191-6 PMID: 16839105
  44. Aromatic-aromatic interactions and protein stability. Investigation by double-mutant cycles.
    J Mol Biol. 1991 Mar 20;218(2):465-75 PMID: 2010920
  45. The D3 dopamine receptor: neurobiology and potential clinical relevance.
    Pharmacol Rev. 1997 Sep;49(3):231-52 PMID: 9311022
  46. Pivotal role for aspartate-80 in the regulation of dopamine D2 receptor affinity for drugs and inhibition of adenylyl cyclase.
    Mol Pharmacol. 1991 Jun;39(6):733-9 PMID: 1828858
  47. Evaluation of direct and cooperative contributions towards the strength of buried hydrogen bonds and salt bridges.
    J Mol Biol. 2000 May 5;298(3):503-20 PMID: 10772866
Article Info
Journal
Journal of the American Chemical Society
Abbr.
J Am Chem Soc
ISSN
1520-5126
Published
2012-09-12
Epub
2012-00-31
Pages
14890-6
Language
English
Region
United States
NLM ID
7503056
PMCID
PMC3461201
Subset
IM
Grants
NIGMS NIH HHS · R01 GM081662 · United States
NIGMS NIH HHS · GM081662 · United States
Analysis Services
Analysis Services

Contact

No. 2 Wenbo Road, Zhangqiu District, Jinan, Shandong

Qilu Normal University · Genelibs Bioinformatics Lab

750 Shunhua Rd, Jinan

2F, Bldg F, University Science Park

Tel: 0531-88819269

WeChat Official Account

Follow our WeChat subscription account for real-time updates and the latest in medical and biological research.


Business Email

E-mail: product@genelibs.com