Home LiteratureArticle Details
PMID: 22635276 Published · ppublish English Journal Article Research Support, N.I.H., Extramural Research Support, Non-U.S. Gov't

Sumoylation of MDC1 is important for proper DNA damage response.

The EMBO journal ·Vol. 31 ·No. 13 ·2012-06-29 ·Pages 3008-19

Luo K, Zhang H, Wang L, Yuan J, Lou Z

Abstract

In response to DNA damage, many DNA damage factors, such as MDC1 and 53BP1, redistribute to sites of DNA damage. The mechanism governing the turnover of these factors at DNA damage sites, however, remains enigmatic. Here, we show that MDC1 is sumoylated following DNA damage, and the sumoylation of MDC1 at Lys1840 is required for MDC1 degradation and removal of MDC1 and 53BP1 from sites of DNA damage. Sumoylated MDC1 is recognized and ubiquitinated by the SUMO-targeted E3 ubiquitin ligase RNF4. Mutation of the MDC1 Lys 1840 (K1840R) results in impaired CtIP, replication protein A, and Rad51 accumulation at sites of DNA damage and defective homologous recombination (HR). The HR defect caused by MDC1K1840R mutation could be rescued by 53BP1 downregulation. These results reveal the intricate dynamics governing the assembly and disassembly of DNA damage factors at sites of DNA damage for prompt response to DNA damage.

MeSH Terms
Adaptor Proteins, Signal Transducing Carrier Proteins/metabolism Cell Cycle Proteins DNA Damage Down-Regulation Endodeoxyribonucleases HEK293 Cells HeLa Cells Humans Intracellular Signaling Peptides and Proteins/metabolism Lysine/metabolism Mutation Nuclear Proteins/genetics,metabolism Rad51 Recombinase/metabolism Recombinational DNA Repair Replication Protein A/metabolism Sumoylation Trans-Activators/genetics,metabolism Transcription Factors/metabolism Tumor Suppressor p53-Binding Protein 1 Ubiquitin-Protein Ligases/metabolism
Chemicals
Adaptor Proteins, Signal Transducing Carrier Proteins Cell Cycle Proteins Intracellular Signaling Peptides and Proteins MDC1 protein, human Nuclear Proteins RNF4 protein, human RPA1 protein, human Replication Protein A TP53BP1 protein, human Trans-Activators Transcription Factors Tumor Suppressor p53-Binding Protein 1 Ubiquitin-Protein Ligases RAD51 protein, human Rad51 Recombinase Endodeoxyribonucleases RBBP8 protein, human Lysine
Authors & Affiliations
5 authors, click to expand affiliations / ORCID
Luo Kuntian
Key Laboratory of Arrhythmia, Ministry of Education, East Hospital, Tongji University School of Medicine, Shanghai, China.
Zhang Haoxing
Wang Liewei
Yuan Jian
Lou Zhenkun
References (52)
52 references, click to expand
  1. The Slx5-Slx8 complex affects sumoylation of DNA repair proteins and negatively regulates recombination.
    Mol Cell Biol. 2007 Sep;27(17):6153-62 PMID: 17591698
  2. BLM-DNA2-RPA-MRN and EXO1-BLM-RPA-MRN constitute two DNA end resection machineries for human DNA break repair.
    Genes Dev. 2011 Feb 15;25(4):350-62 PMID: 21325134
  3. BRCA2 is required for homology-directed repair of chromosomal breaks.
    Mol Cell. 2001 Feb;7(2):263-72 PMID: 11239455
  4. Identification of Holliday junction resolvases from humans and yeast.
    Nature. 2008 Nov 20;456(7220):357-61 PMID: 19020614
  5. ATM activation by DNA double-strand breaks through the Mre11-Rad50-Nbs1 complex.
    Science. 2005 Apr 22;308(5721):551-4 PMID: 15790808
  6. The DNA damage response: ten years after.
    Mol Cell. 2007 Dec 14;28(5):739-45 PMID: 18082599
  7. MDC1 maintains genomic stability by participating in the amplification of ATM-dependent DNA damage signals.
    Mol Cell. 2006 Jan 20;21(2):187-200 PMID: 16427009
  8. Recombinational DNA repair and human disease.
    Mutat Res. 2002 Nov 30;509(1-2):49-78 PMID: 12427531
  9. Sgs1 helicase and two nucleases Dna2 and Exo1 resect DNA double-strand break ends.
    Cell. 2008 Sep 19;134(6):981-94 PMID: 18805091
  10. Distinct roles of chromatin-associated proteins MDC1 and 53BP1 in mammalian double-strand break repair.
    Mol Cell. 2007 Dec 28;28(6):1045-57 PMID: 18158901
  11. MDC1: The art of keeping things in focus.
    Chromosoma. 2010 Aug;119(4):337-49 PMID: 20224865
  12. MDC1 is required for the intra-S-phase DNA damage checkpoint.
    Nature. 2003 Feb 27;421(6926):952-6 PMID: 12607003
  13. Mechanism of eukaryotic homologous recombination.
    Annu Rev Biochem. 2008;77:229-57 PMID: 18275380
  14. Suppression of genomic instability by SLX5 and SLX8 in Saccharomyces cerevisiae.
    DNA Repair (Amst). 2006 Mar 7;5(3):336-46 PMID: 16325482
  15. Ku regulates the non-homologous end joining pathway choice of DNA double-strand break repair in human somatic cells.
    PLoS Genet. 2010 Feb 26;6(2):e1000855 PMID: 20195511
  16. Conserved modes of recruitment of ATM, ATR and DNA-PKcs to sites of DNA damage.
    Nature. 2005 Mar 31;434(7033):605-11 PMID: 15758953
  17. The 3' to 5' exonuclease activity of Mre 11 facilitates repair of DNA double-strand breaks.
    Mol Cell. 1998 Jun;1(7):969-79 PMID: 9651580
  18. Human CtIP promotes DNA end resection.
    Nature. 2007 Nov 22;450(7169):509-14 PMID: 17965729
  19. HERC2 coordinates ubiquitin-dependent assembly of DNA repair factors on damaged chromosomes.
    Nat Cell Biol. 2010 Jan;12(1):80-6; sup pp 1-12 PMID: 20023648
  20. Nucleases and helicases take center stage in homologous recombination.
    Trends Biochem Sci. 2009 May;34(5):264-72 PMID: 19375328
  21. MDC1/NFBD1: a key regulator of the DNA damage response in higher eukaryotes.
    DNA Repair (Amst). 2004 Aug-Sep;3(8-9):953-7 PMID: 15279781
  22. Disassembly of MDC1 foci is controlled by ubiquitin-proteasome-dependent degradation.
    J Biol Chem. 2008 Nov 14;283(46):31608-16 PMID: 18757370
  23. Molecular views of recombination proteins and their control.
    Nat Rev Mol Cell Biol. 2003 Jun;4(6):435-45 PMID: 12778123
  24. Regulation of DNA repair through deSUMOylation and SUMOylation of replication protein A complex.
    Mol Cell. 2010 Aug 13;39(3):333-45 PMID: 20705237
  25. Holliday junction resolution in human cells: two junction endonucleases with distinct substrate specificities.
    EMBO J. 2002 Oct 15;21(20):5577-85 PMID: 12374758
  26. Dynamics of DNA damage response proteins at DNA breaks: a focus on protein modifications.
    Genes Dev. 2011 Mar 1;25(5):409-33 PMID: 21363960
  27. The mechanism of vertebrate nonhomologous DNA end joining and its role in V(D)J recombination.
    DNA Repair (Amst). 2004 Aug-Sep;3(8-9):817-26 PMID: 15279766
  28. MDC1 directly binds phosphorylated histone H2AX to regulate cellular responses to DNA double-strand breaks.
    Cell. 2005 Dec 29;123(7):1213-26 PMID: 16377563
  29. MDC1 is a mediator of the mammalian DNA damage checkpoint.
    Nature. 2003 Feb 27;421(6926):961-6 PMID: 12607005
  30. Conserved function of RNF4 family proteins in eukaryotes: targeting a ubiquitin ligase to SUMOylated proteins.
    EMBO J. 2007 Sep 19;26(18):4102-12 PMID: 17762864
  31. Requirement of the MRN complex for ATM activation by DNA damage.
    EMBO J. 2003 Oct 15;22(20):5612-21 PMID: 14532133
  32. The DNA damage response: putting checkpoints in perspective.
    Nature. 2000 Nov 23;408(6811):433-9 PMID: 11100718
  33. Fission yeast Rnf4 homologs are required for DNA repair.
    J Biol Chem. 2007 Jul 13;282(28):20388-94 PMID: 17502373
  34. H2AX prevents CtIP-mediated DNA end resection and aberrant repair in G1-phase lymphocytes.
    Nature. 2011 Jan 13;469(7329):245-9 PMID: 21160476
  35. Intra-nuclear trafficking of the BLM helicase to DNA damage-induced foci is regulated by SUMO modification.
    Hum Mol Genet. 2005 May 15;14(10):1351-65 PMID: 15829507
  36. SUMO-targeted ubiquitin ligases in genome stability.
    EMBO J. 2007 Sep 19;26(18):4089-101 PMID: 17762865
  37. Dealing with DNA damage: relationships between checkpoint and repair pathways.
    Mutat Res. 2010 Apr-Jun;704(1-3):2-11 PMID: 20006736
  38. Ctp1/CtIP and the MRN complex collaborate in the initial steps of homologous recombination.
    Mol Cell. 2007 Nov 9;28(3):351-2 PMID: 17996697
  39. MDC1 interacts with Rad51 and facilitates homologous recombination.
    Nat Struct Mol Biol. 2005 Oct;12(10):902-9 PMID: 16186822
  40. Arsenic degrades PML or PML-RARalpha through a SUMO-triggered RNF4/ubiquitin-mediated pathway.
    Nat Cell Biol. 2008 May;10(5):547-55 PMID: 18408733
  41. SUMO modification of human XRCC4 regulates its localization and function in DNA double-strand break repair.
    Mol Cell Biol. 2006 Mar;26(5):1786-94 PMID: 16478998
  42. The 53BP1-EXPAND1 connection in chromatin structure regulation.
    Nucleus. 2010 Nov-Dec;1(6):472-4 PMID: 21327088
  43. 53BP1 loss rescues BRCA1 deficiency and is associated with triple-negative and BRCA-mutated breast cancers.
    Nat Struct Mol Biol. 2010 Jun;17(6):688-95 PMID: 20453858
  44. The SUMO modification pathway is involved in the BRCA1 response to genotoxic stress.
    Nature. 2009 Dec 17;462(7275):886-90 PMID: 20016594
  45. RNF4 is a poly-SUMO-specific E3 ubiquitin ligase required for arsenic-induced PML degradation.
    Nat Cell Biol. 2008 May;10(5):538-46 PMID: 18408734
  46. Megabase chromatin domains involved in DNA double-strand breaks in vivo.
    J Cell Biol. 1999 Sep 6;146(5):905-16 PMID: 10477747
  47. Mammalian SUMO E3-ligases PIAS1 and PIAS4 promote responses to DNA double-strand breaks.
    Nature. 2009 Dec 17;462(7275):935-9 PMID: 20016603
  48. Mechanism and regulation of human non-homologous DNA end-joining.
    Nat Rev Mol Cell Biol. 2003 Sep;4(9):712-20 PMID: 14506474
  49. A SIM-ultaneous role for SUMO and ubiquitin.
    Trends Biochem Sci. 2008 May;33(5):201-8 PMID: 18403209
  50. Mediator of DNA damage checkpoint protein 1 regulates BRCA1 localization and phosphorylation in DNA damage checkpoint control.
    J Biol Chem. 2003 Apr 18;278(16):13599-602 PMID: 12611903
  51. 53BP1 inhibits homologous recombination in Brca1-deficient cells by blocking resection of DNA breaks.
    Cell. 2010 Apr 16;141(2):243-54 PMID: 20362325
  52. The search for a human Holliday junction resolvase.
    Biochem Soc Trans. 2009 Jun;37(Pt 3):519-26 PMID: 19442245
Article Info
Journal
The EMBO journal
Abbr.
EMBO J
ISSN
1460-2075
Published
2012-06-29
Epub
2012-00-25
Pages
3008-19
Language
English
Region
England
NLM ID
8208664
PMCID
PMC3395099
Subset
IM
Grants
NCI NIH HHS · R01 CA151329 · United States
NCI NIH HHS · R01 CA130996 · United States
NCI NIH HHS · R01 CA148940 · United States
NCI NIH HHS · CA151329 · United States
NCI NIH HHS · CA130996 · United States
Analysis Services
Analysis Services

Contact

No. 2 Wenbo Road, Zhangqiu District, Jinan, Shandong

Qilu Normal University · Genelibs Bioinformatics Lab

750 Shunhua Rd, Jinan

2F, Bldg F, University Science Park

Tel: 0531-88819269

WeChat Official Account

Follow our WeChat subscription account for real-time updates and the latest in medical and biological research.


Business Email

E-mail: product@genelibs.com