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PMID: 22022283 Published · ppublish English Journal Article Research Support, Non-U.S. Gov't

The bicoid stability factor controls polyadenylation and expression of specific mitochondrial mRNAs in Drosophila melanogaster.

PLoS genetics ·Vol. 7 ·No. 10 ·2011-10-00 ·Pages e1002324

Bratic A, Wredenberg A, Grönke S, Stewart JB, Mourier A, Ruzzenente B, Kukat C, Wibom R, Habermann B, Partridge L, Larsson NG

Abstract

The bicoid stability factor (BSF) of Drosophila melanogaster has been reported to be present in the cytoplasm, where it stabilizes the maternally contributed bicoid mRNA and binds mRNAs expressed from early zygotic genes. BSF may also have other roles, as it is ubiquitously expressed and essential for survival of adult flies. We have performed immunofluorescence and cell fractionation analyses and show here that BSF is mainly a mitochondrial protein. We studied two independent RNAi knockdown fly lines and report that reduced BSF protein levels lead to a severe respiratory deficiency and delayed development at the late larvae stage. Ubiquitous knockdown of BSF results in a severe reduction of the polyadenylation tail lengths of specific mitochondrial mRNAs, accompanied by an enrichment of unprocessed polycistronic RNA intermediates. Furthermore, we observed a significant reduction in mRNA steady state levels, despite increased de novo transcription. Surprisingly, mitochondrial de novo translation is increased and abnormal mitochondrial translation products are present in knockdown flies, suggesting that BSF also has a role in coordinating the mitochondrial translation in addition to its role in mRNA maturation and stability. We thus report a novel function of BSF in flies and demonstrate that it has an important intra-mitochondrial role, which is essential for maintaining mtDNA gene expression and oxidative phosphorylation.

MeSH Terms
Animals Body Weight/genetics Drosophila Proteins/genetics,metabolism Drosophila melanogaster/genetics,growth & development,physiology Fertility/genetics Gene Expression Regulation, Developmental Gene Knockdown Techniques Mitochondria/genetics,physiology Mitochondrial Proteins/genetics,metabolism Oxidative Phosphorylation Phylogeny Polyadenylation/genetics Protein Biosynthesis RNA Interference RNA, Messenger/genetics RNA-Binding Proteins/genetics,metabolism
Chemicals
Drosophila Proteins Mitochondrial Proteins RNA, Messenger RNA-Binding Proteins bicoid stability factor, Drosophila
Authors & Affiliations
11 authors, click to expand affiliations / ORCID
Bratic Ana
Department of Laboratory Medicine, Karolinska Institutet, Solna, Sweden.
Wredenberg Anna
Grönke Sebastian
Stewart James B
Mourier Arnaud
Ruzzenente Benedetta
Kukat Christian
Wibom Rolf
Habermann Bianca
Partridge Linda
Larsson Nils-Göran
Conflict of Interest

The authors have declared that no competing interests exist.

References (52)
52 references, click to expand
  1. Mitochondrial and nuclear genomic responses to loss of LRPPRC expression.
    J Biol Chem. 2010 Apr 30;285(18):13742-7 PMID: 20220140
  2. Identification of a novel human nuclear-encoded mitochondrial poly(A) polymerase.
    Nucleic Acids Res. 2004 Nov 16;32(20):6001-14 PMID: 15547249
  3. Messenger RNA deadenylylation precedes decapping in mammalian cells.
    Proc Natl Acad Sci U S A. 1997 May 27;94(11):5628-33 PMID: 9159123
  4. Animal mitochondrial genomes.
    Nucleic Acids Res. 1999 Apr 15;27(8):1767-80 PMID: 10101183
  5. Investigation of a pathogenic mtDNA microdeletion reveals a translation-dependent deadenylation decay pathway in human mitochondria.
    Hum Mol Genet. 2003 Sep 15;12(18):2341-8 PMID: 12915481
  6. Defects in energy homeostasis in Leigh syndrome French Canadian variant through PGC-1alpha/LRP130 complex.
    Genes Dev. 2006 Nov 1;20(21):2996-3009 PMID: 17050673
  7. Tissue subcellular fractionation and protein extraction for use in mass-spectrometry-based proteomics.
    Nat Protoc. 2006;1(4):1872-8 PMID: 17487171
  8. Characterization of mitochondrial mRNAs in codfish reveals unique features compared to mammals.
    Curr Genet. 2011 Jun;57(3):213-22 PMID: 21484258
  9. Human mitochondrial mRNAs--like members of all families, similar but different.
    Biochim Biophys Acta. 2010 Jun-Jul;1797(6-7):1081-5 PMID: 20211597
  10. Estimating maximum likelihood phylogenies with PhyML.
    Methods Mol Biol. 2009;537:113-37 PMID: 19378142
  11. The Saccharomyces cerevisiae Pet309 protein is embedded in the mitochondrial inner membrane.
    Eur J Biochem. 1998 Jul 1;255(1):156-61 PMID: 9692914
  12. Improvement of phylogenies after removing divergent and ambiguously aligned blocks from protein sequence alignments.
    Syst Biol. 2007 Aug;56(4):564-77 PMID: 17654362
  13. Pentatricopeptide repeat proteins stimulate mRNA adenylation/uridylation to activate mitochondrial translation in trypanosomes.
    Mol Cell. 2011 Apr 8;42(1):106-17 PMID: 21474072
  14. tRNA punctuation model of RNA processing in human mitochondria.
    Nature. 1981 Apr 9;290(5806):470-4 PMID: 7219536
  15. Polyadenylation and degradation of mRNA in mammalian mitochondria: a missing link?
    Biochem Soc Trans. 2008 Jun;36(Pt 3):517-9 PMID: 18481994
  16. Characterization of mature mitochondrial transcripts in Drosophila, and the implications for the tRNA punctuation model in arthropods.
    Gene. 2009 Sep 15;445(1-2):49-57 PMID: 19540318
  17. BSF binds specifically to the bicoid mRNA 3' untranslated region and contributes to stabilization of bicoid mRNA.
    Mol Cell Biol. 2001 May;21(10):3462-71 PMID: 11313472
  18. Blue native electrophoresis for isolation of membrane protein complexes in enzymatically active form.
    Anal Biochem. 1991 Dec;199(2):223-31 PMID: 1812789
  19. Methylation of 12S rRNA is necessary for in vivo stability of the small subunit of the mammalian mitochondrial ribosome.
    Cell Metab. 2009 Apr;9(4):386-97 PMID: 19356719
  20. Molecular dissection of the eukaryotic initiation factor 4E (eIF4E) export-competent RNP.
    EMBO J. 2009 Apr 22;28(8):1087-98 PMID: 19262567
  21. Multiple sequence alignment with the Clustal series of programs.
    Nucleic Acids Res. 2003 Jul 1;31(13):3497-500 PMID: 12824352
  22. Mechanism and regulation of mRNA polyadenylation.
    Genes Dev. 1997 Nov 1;11(21):2755-66 PMID: 9353246
  23. Identification of a gene causing human cytochrome c oxidase deficiency by integrative genomics.
    Proc Natl Acad Sci U S A. 2003 Jan 21;100(2):605-10 PMID: 12529507
  24. Distinct RNP complexes of shuttling hnRNP proteins with pre-mRNA and mRNA: candidate intermediates in formation and export of mRNA.
    Mol Cell Biol. 2001 Nov;21(21):7307-19 PMID: 11585913
  25. Distinctive features of the 5'-terminal sequences of the human mitochondrial mRNAs.
    Nature. 1981 Apr 9;290(5806):465-70 PMID: 7219535
  26. The role of the LRPPRC (leucine-rich pentatricopeptide repeat cassette) gene in cytochrome oxidase assembly: mutation causes lowered levels of COX (cytochrome c oxidase) I and COX III mRNA.
    Biochem J. 2004 Aug 15;382(Pt 1):331-6 PMID: 15139850
  27. Genome-wide analysis of Arabidopsis pentatricopeptide repeat proteins reveals their essential role in organelle biogenesis.
    Plant Cell. 2004 Aug;16(8):2089-103 PMID: 15269332
  28. LRPPRC is a mitochondrial matrix protein that is conserved in metazoans.
    Biochem Biophys Res Commun. 2010 Aug 6;398(4):759-64 PMID: 20633537
  29. DNA replication and transcription in mammalian mitochondria.
    Annu Rev Biochem. 2007;76:679-99 PMID: 17408359
  30. Dendroscope: An interactive viewer for large phylogenetic trees.
    BMC Bioinformatics. 2007 Nov 22;8:460 PMID: 18034891
  31. Expression of the mammalian mitochondrial genome. Stability of mitochondrial translation products as a function of membrane potential.
    J Biol Chem. 1989 May 25;264(15):8487-90 PMID: 2722783
  32. Messenger RNA degradation in eukaryotes.
    Cell. 1993 Aug 13;74(3):413-21 PMID: 7688664
  33. Maintenance of respiratory chain function in mouse hearts with severely impaired mtDNA transcription.
    Nucleic Acids Res. 2010 Oct;38(19):6577-88 PMID: 20566479
  34. Characterization of the preprotein translocase of the outer mitochondrial membrane by blue native electrophoresis.
    Biol Chem. 1996 Jul-Aug;377(7-8):535-8 PMID: 8922289
  35. LRPPRC and SLIRP interact in a ribonucleoprotein complex that regulates posttranscriptional gene expression in mitochondria.
    Mol Biol Cell. 2010 Apr 15;21(8):1315-23 PMID: 20200222
  36. Mitochondrial pathology and apoptotic muscle degeneration in Drosophila parkin mutants.
    Proc Natl Acad Sci U S A. 2003 Apr 1;100(7):4078-83 PMID: 12642658
  37. Unmasking activation of the zygotic genome using chromosomal deletions in the Drosophila embryo.
    PLoS Biol. 2007 May;5(5):e117 PMID: 17456005
  38. The product of the nuclear gene PET309 is required for translation of mature mRNA and stability or production of intron-containing RNAs derived from the mitochondrial COX1 locus of Saccharomyces cerevisiae.
    EMBO J. 1995 Aug 15;14(16):4031-43 PMID: 7664742
  39. Increased mitochondrial mass in mitochondrial myopathy mice.
    Proc Natl Acad Sci U S A. 2002 Nov 12;99(23):15066-71 PMID: 12417746
  40. Accumulation of mitochondrially synthesized Saccharomyces cerevisiae Cox2p and Cox3p depends on targeting information in untranslated portions of their mRNAs.
    EMBO J. 1998 Oct 1;17(19):5796-804 PMID: 9755179
  41. LRP130, a single-stranded DNA/RNA-binding protein, localizes at the outer nuclear and endoplasmic reticulum membrane, and interacts with mRNA in vivo.
    Biochem Biophys Res Commun. 2004 May 7;317(3):736-43 PMID: 15081402
  42. Using FlyAtlas to identify better Drosophila melanogaster models of human disease.
    Nat Genet. 2007 Jun;39(6):715-20 PMID: 17534367
  43. Gapped BLAST and PSI-BLAST: a new generation of protein database search programs.
    Nucleic Acids Res. 1997 Sep 1;25(17):3389-402 PMID: 9254694
  44. Drosophila melanogaster as a model system to study mitochondrial biology.
    Methods Mol Biol. 2007;372:33-49 PMID: 18314716
  45. MTERF3, the most conserved member of the mTERF-family, is a modular factor involved in mitochondrial protein synthesis.
    Biochim Biophys Acta. 2006 Sep-Oct;1757(9-10):1199-206 PMID: 16787637
  46. In organello RNA synthesis system from mammalian liver and brain.
    Methods Enzymol. 1996;264:50-7 PMID: 8965722
  47. Messenger RNA stability in mitochondria: different means to an end.
    Trends Genet. 2004 Jun;20(6):260-7 PMID: 15145579
  48. Active proton leak in mitochondria: a new way to regulate substrate oxidation.
    Biochim Biophys Acta. 2010 Feb;1797(2):255-61 PMID: 19896922
  49. Inhibition of mitochondrial protein synthesis promotes increased stability of nuclear-encoded respiratory gene transcripts.
    J Biol Chem. 1994 Nov 4;269(44):27322-8 PMID: 7525553
  50. Assay of picomole amounts of ATP, ADP, and AMP using the luciferase enzyme system.
    Anal Biochem. 1975 Nov;69(1):187-206 PMID: 2029
  51. New invMED1 element cis-activates human multidrug-related MDR1 and MVP genes, involving the LRP130 protein.
    Nucleic Acids Res. 2004 Jul 22;32(13):3864-76 PMID: 15272088
  52. The A3243G tRNALeu(UUR) MELAS mutation causes amino acid misincorporation and a combined respiratory chain assembly defect partially suppressed by overexpression of EFTu and EFG2.
    Hum Mol Genet. 2008 Dec 1;17(23):3697-707 PMID: 18753147
Article Info
Journal
PLoS genetics
Abbr.
PLoS Genet
ISSN
1553-7404
Published
2011-10-00
Epub
2011-00-13
Pages
e1002324
Language
English
Region
United States
NLM ID
101239074
PMCID
PMC3192837
Subset
IM
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