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PMID: 219249 Published · ppublish English Journal Article

In vitro, the major ribosome binding site on Rous sarcoma virus RNA does not contain the nucleotide sequence coding for the N-terminal amino acids of the gag gene product.

Journal of virology ·Vol. 29 ·No. 2 ·1979-02-00 ·Pages 597-611

Darlix JL, Spahr PF, Bromley PA, Jaton JC

Abstract

Ribosomes from the reticulocyte lysate bind strongly and mainly to a region located in the 5' end of the Rous sarcoma virus RNA molecule between residues 9 and 53. This binding involves the participation of initiator tRNA and is sensitive to inhibitors of initiation of protein synthesis such as 7-methyl-GMP and aurintricarboxylic acid. The nucleotide sequence of this ribosome binding site has been determined: it conatains a GUG codon centered at position 26 that is not in phase with any termination codon within the 5' end nucleotide sequence of the RNA that we have analyzed (101 residues). However, the predicted N-terminal amino acid sequence starting from this GUG codon (or even from any AUG or GUG codon in the 5' end of the RNA) does not coincide with that of the in vitro-synthesized product of the 5' end proximal gag gene. Nevertheless, inhibition of ribosome binding to this site is accompanied by an inhibition of the in vitro translation of the gag gene.

MeSH Terms
Amino Acid Sequence Avian Sarcoma Viruses/analysis,metabolism Base Sequence Binding Sites/drug effects Guanosine Monophosphate/analogs & derivatives,pharmacology Nucleotides/analysis RNA, Viral/analysis,metabolism Reticulocytes Ribosomes/metabolism
Chemicals
Nucleotides RNA, Viral Guanosine Monophosphate
Authors & Affiliations
4 authors, click to expand affiliations / ORCID
Darlix J L
Spahr P F
Bromley P A
Jaton J C
References (34)
34 references, click to expand
  1. Structure-function relationship of 5' non-coding sequence of rabbit alpha- and beta-globin mRNA.
    Nature. 1977 May 19;267(5608):279-81 PMID: 865623
  2. Characterization of the ribosome-protected regions of 125I-labelled rabbit globin messenger RNA.
    J Mol Biol. 1976 Sep 5;106(1):37-53 PMID: 972401
  3. The binding of 125I-labelled rabbit globin messenger RNA to reticulocyte ribosomes.
    J Mol Biol. 1976 Sep 5;106(1):23-36 PMID: 972400
  4. Prevention of NH2-terminal acetylation of proteins synthesized in cell-free systems.
    J Biol Chem. 1977 Dec 25;252(24):8781-3 PMID: 925022
  5. A joint produce of the genes gag and pol of avian sarcoma virus: a possible precursor of reverse transcriptase.
    Cell. 1977 Dec;12(4):993-1005 PMID: 74287
  6. Conservation of the primary structure at the 3' end of 18S rRNA from eucaryotic cells.
    Cell. 1978 Mar;13(3):551-63 PMID: 77738
  7. Extensive in vitro transcription of rous sarcoma virus RNA by avian myeloblastosis virus DNA polymerase and concurrent activation of the associated RNase H.
    J Virol. 1977 Sep;23(3):659-68 PMID: 70539
  8. Rous sarcoma virus genome is terminally redundant: the 5' sequence.
    Proc Natl Acad Sci U S A. 1977 Mar;74(3):989-93 PMID: 66683
  9. New procedure for the direct analysis of in vitro reverse transcription of Rous sarcoma virus RNA.
    J Virol. 1977 Apr;22(1):118-29 PMID: 67218
  10. Evidence for splicing of avian sarcoma virus 5'-terminal genomic sequences into viral-specific RNA in infected cells.
    Proc Natl Acad Sci U S A. 1978 Mar;75(3):1284-8 PMID: 206893
  11. Translation of MuLV and MSV RNAs in nuclease-treated reticulocyte extracts: enhancement of the gag-pol polypeptide with yeast suppressor tRNA.
    Cell. 1978 Jan;13(1):189-99 PMID: 202399
  12. In vitro translation yields a possible Rous sarcoma virus src gene product.
    Proc Natl Acad Sci U S A. 1977 Aug;74(8):3302-6 PMID: 198780
  13. Mapping adenines, guanines, and pyrimidines in RNA.
    Nucleic Acids Res. 1977 Aug;4(8):2527-38 PMID: 409999
  14. A new method for sequencing DNA.
    Proc Natl Acad Sci U S A. 1977 Feb;74(2):560-4 PMID: 265521
  15. Nucleotide sequences of 5'-terminal ribosome-protected initiation regions from two reovirus messages.
    Nature. 1977 Sep 29;269(5627):391-4 PMID: 909586
  16. Sequences of two 5'-terminal ribosome-protected fragments from reovirus messenger RNAs.
    J Mol Biol. 1977 May 5;112(1):75-96 PMID: 881728
  17. An efficient mRNA-dependent translation system from reticulocyte lysates.
    Eur J Biochem. 1976 AUG 1;67(1):247-56 PMID: 823012
  18. Preparation and analysis of L-( 35 S)methionine labeled transfer ribonucleic acids from rabbit liver.
    Anal Biochem. 1972 Jul;48(1):202-16 PMID: 4557421
  19. Initiation of protein synthesis: evidence for messenger RNA-independent binding of methionyl-transfer RNA to the 40 S ribosomal subunit.
    J Mol Biol. 1973 May 25;76(3):379-403 PMID: 4732074
  20. Isolation of mammalian transfer RNA.
    Biochim Biophys Acta. 1969 Nov 19;195(1):13-5 PMID: 5357028
  21. Tumor virus ribonucleic acid directed deoxyribonucleic acid synthesis: nucleotide sequence at the 5' terminus of nascent deoxyribonucleic acid.
    Biochemistry. 1974 Jul 16;13(15):3159-63 PMID: 4135218
  22. Transcription of DNA from the 70S RNA of Rous sarcoma virus. I. Identification of a specific 4S RNA which serves as primer.
    J Virol. 1974 May;13(5):1126-33 PMID: 4132919
  23. Properties and location of poly(A) in Rous sarcoma virus RNA.
    J Virol. 1974 Dec;14(6):1515-29 PMID: 4372409
  24. A sequence of 50 nucleotides from coliphage R17 RNA.
    Eur J Biochem. 1973 Feb 15;33(1):8-18 PMID: 4347963
  25. Early synthesis of virus-specific RNA and DNA in cells rapidly transformed with Rous sarcoma virus.
    Virology. 1973 Dec;56(2):532-48 PMID: 4357055
  26. Temperature sensitive mutants of avian sarcoma viruses.
    Biochim Biophys Acta. 1975 Jul 11;417(2):91-121 PMID: 50087
  27. Nucleotide sequence that binds primer for DNA synthesis to the avian sarcoma virus genome.
    J Virol. 1976 Aug;19(2):548-58 PMID: 183013
  28. The rabbit reticulocyte lysate as a system for studying mRNA.
    Hamatol Bluttransfus. 1974;14:300-7 PMID: 4448420
  29. Generation of avian myeloblastosis virus structural proteins by proteolytic cleavage of a precursor polypeptide.
    J Mol Biol. 1975 Aug 15;96(3):471-93 PMID: 170408
  30. Identification of the 5' end of Rous sarcoma virus RNA.
    Proc Natl Acad Sci U S A. 1975 Sep;72(9):3347-50 PMID: 171660
  31. Preparative two-dimensional polyacrylamide gel electrophoresis of 32 P-labeled RNA.
    Anal Biochem. 1972 Sep;49(1):184-97 PMID: 5081097
  32. Nucleotide sequence of a viral RNA fragment that binds to eukaryotic ribosomes.
    Nature. 1975 Aug 21;256(5519):624-8 PMID: 807854
  33. The application of 0.1 M quadrol to the microsequence of proteins and the sequence of tryptic peptides.
    Biochemistry. 1975 Jul;14(13):3029-35 PMID: 1148190
  34. The origin and nature of the methionine residue initiating the synthesis of haemoglobin in vivo and in vitro.
    Eur J Biochem. 1971 Apr;19(3):316-22 PMID: 5554226
Article Info
Journal
Journal of virology
Abbr.
J Virol
ISSN
0022-538X
Published
1979-02-00
Pages
597-611
Language
English
Region
United States
NLM ID
0113724
PMCID
PMC353193
Subset
IM
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