Home LiteratureArticle Details
PMID: 21814200 Published · epublish English Journal Article Research Support, N.I.H., Extramural Research Support, Non-U.S. Gov't

RNAi screen identifies Brd4 as a therapeutic target in acute myeloid leukaemia.

Nature ·Vol. 478 ·No. 7370 ·2011-08-03 ·Pages 524-8

Zuber J, Shi J, Wang E, Rappaport AR, Herrmann H, Sison EA, Magoon D, Qi J, Blatt K, Wunderlich M, Taylor MJ, Johns C, Chicas A, Mulloy JC, Kogan SC, Brown P, Valent P, Bradner JE, Lowe SW, Vakoc CR

Abstract

Epigenetic pathways can regulate gene expression by controlling and interpreting chromatin modifications. Cancer cells are characterized by altered epigenetic landscapes, and commonly exploit the chromatin regulatory machinery to enforce oncogenic gene expression programs. Although chromatin alterations are, in principle, reversible and often amenable to drug intervention, the promise of targeting such pathways therapeutically has been limited by an incomplete understanding of cancer-specific dependencies on epigenetic regulators. Here we describe a non-biased approach to probe epigenetic vulnerabilities in acute myeloid leukaemia (AML), an aggressive haematopoietic malignancy that is often associated with aberrant chromatin states. By screening a custom library of small hairpin RNAs (shRNAs) targeting known chromatin regulators in a genetically defined AML mouse model, we identify the protein bromodomain-containing 4 (Brd4) as being critically required for disease maintenance. Suppression of Brd4 using shRNAs or the small-molecule inhibitor JQ1 led to robust antileukaemic effects in vitro and in vivo, accompanied by terminal myeloid differentiation and elimination of leukaemia stem cells. Similar sensitivities were observed in a variety of human AML cell lines and primary patient samples, revealing that JQ1 has broad activity in diverse AML subtypes. The effects of Brd4 suppression are, at least in part, due to its role in sustaining Myc expression to promote aberrant self-renewal, which implicates JQ1 as a pharmacological means to suppress MYC in cancer. Our results establish small-molecule inhibition of Brd4 as a promising therapeutic strategy in AML and, potentially, other cancers, and highlight the utility of RNA interference (RNAi) screening for revealing epigenetic vulnerabilities that can be exploited for direct pharmacological intervention.

MeSH Terms
Acetylation Animals Azepines/pharmacology Cell Differentiation Cell Line, Tumor Cell Proliferation Chromatin/metabolism Disease Progression Epigenesis, Genetic/genetics Gene Expression Regulation, Neoplastic Genes, myc/genetics Histones/metabolism Humans Leukemia, Myeloid, Acute/drug therapy,genetics,pathology Mice Neoplasm Transplantation Neoplastic Stem Cells/drug effects,pathology Nuclear Proteins/antagonists & inhibitors,biosynthesis,genetics,metabolism RNA Interference RNA, Small Interfering/genetics Transcription Factors/antagonists & inhibitors,biosynthesis,genetics,metabolism Triazoles/pharmacology
Chemicals
(+)-JQ1 compound Azepines Brd4 protein, mouse Chromatin Histones Nuclear Proteins RNA, Small Interfering Transcription Factors Triazoles
Authors & Affiliations
20 authors, click to expand affiliations / ORCID
Zuber Johannes
Cold Spring Harbor Laboratory, 1 Bungtown Road, Cold Spring Harbor, New York 11724, USA.
Shi Junwei
Wang Eric
Rappaport Amy R
Herrmann Harald
Sison Edward A
Magoon Daniel
Qi Jun
Blatt Katharina
Wunderlich Mark
Taylor Meredith J
Johns Christopher
Chicas Agustin
Mulloy James C
Kogan Scott C
Brown Patrick
Valent Peter
Bradner James E
Lowe Scott W
Vakoc Christopher R
References (41)
41 references, click to expand
  1. DNA methylation signatures identify biologically distinct subtypes in acute myeloid leukemia.
    Cancer Cell. 2010 Jan 19;17(1):13-27 PMID: 20060365
  2. Menin critically links MLL proteins with LEDGF on cancer-associated target genes.
    Cancer Cell. 2008 Jul 8;14(1):36-46 PMID: 18598942
  3. Modelling Myc inhibition as a cancer therapy.
    Nature. 2008 Oct 2;455(7213):679-83 PMID: 18716624
  4. Proposed revised criteria for the classification of acute myeloid leukemia. A report of the French-American-British Cooperative Group.
    Ann Intern Med. 1985 Oct;103(4):620-5 PMID: 3862359
  5. Identification and characterization of leukemia stem cells in murine MLL-AF9 acute myeloid leukemia.
    Cancer Cell. 2006 Oct;10(4):257-68 PMID: 17045204
  6. The transcriptional program of a human B cell line in response to Myc.
    Nucleic Acids Res. 2001 Jan 15;29(2):397-406 PMID: 11139609
  7. Stem cell concepts renew cancer research.
    Blood. 2008 Dec 15;112(13):4793-807 PMID: 19064739
  8. H3K79 methylation profiles define murine and human MLL-AF4 leukemias.
    Cancer Cell. 2008 Nov 4;14(5):355-68 PMID: 18977325
  9. A Myc network accounts for similarities between embryonic stem and cancer cell transcription programs.
    Cell. 2010 Oct 15;143(2):313-24 PMID: 20946988
  10. The 2008 revision of the World Health Organization (WHO) classification of myeloid neoplasms and acute leukemia: rationale and important changes.
    Blood. 2009 Jul 30;114(5):937-51 PMID: 19357394
  11. Proposals for the classification of the acute leukaemias. French-American-British (FAB) co-operative group.
    Br J Haematol. 1976 Aug;33(4):451-8 PMID: 188440
  12. ETO, fusion partner in t(8;21) acute myeloid leukemia, represses transcription by interaction with the human N-CoR/mSin3/HDAC1 complex.
    Proc Natl Acad Sci U S A. 1998 Sep 1;95(18):10860-5 PMID: 9724795
  13. DNMT3A mutations in acute myeloid leukemia.
    N Engl J Med. 2010 Dec 16;363(25):2424-33 PMID: 21067377
  14. GenePattern 2.0.
    Nat Genet. 2006 May;38(5):500-1 PMID: 16642009
  15. Toolkit for evaluating genes required for proliferation and survival using tetracycline-regulated RNAi.
    Nat Biotechnol. 2011 Jan;29(1):79-83 PMID: 21131983
  16. Regulation of the resident chromosomal copy of c-myc by c-Myb is involved in myeloid leukemogenesis.
    Mol Cell Biol. 2000 Mar;20(6):1970-81 PMID: 10688644
  17. Microenvironment determines lineage fate in a human model of MLL-AF9 leukemia.
    Cancer Cell. 2008 Jun;13(6):483-95 PMID: 18538732
  18. Model systems for examining effects of leukemia-associated oncogenes in primary human CD34+ cells via retroviral transduction.
    Methods Mol Biol. 2009;538:263-85 PMID: 19277588
  19. Probing tumor phenotypes using stable and regulated synthetic microRNA precursors.
    Nat Genet. 2005 Nov;37(11):1289-95 PMID: 16200064
  20. The bromodomain protein Brd4 is a positive regulatory component of P-TEFb and stimulates RNA polymerase II-dependent transcription.
    Mol Cell. 2005 Aug 19;19(4):523-34 PMID: 16109376
  21. Hierarchical maintenance of MLL myeloid leukemia stem cells employs a transcriptional program shared with embryonic rather than adult stem cells.
    Cell Stem Cell. 2009 Feb 6;4(2):129-40 PMID: 19200802
  22. An epi-allelic series of p53 hypomorphs created by stable RNAi produces distinct tumor phenotypes in vivo.
    Nat Genet. 2003 Mar;33(3):396-400 PMID: 12567186
  23. Using galaxy to perform large-scale interactive data analyses.
    Curr Protoc Bioinformatics. 2007 Sep;Chapter 10:Unit 10.5 PMID: 18428782
  24. Gene set enrichment analysis: a knowledge-based approach for interpreting genome-wide expression profiles.
    Proc Natl Acad Sci U S A. 2005 Oct 25;102(43):15545-50 PMID: 16199517
  25. Selective inhibition of BET bromodomains.
    Nature. 2010 Dec 23;468(7327):1067-73 PMID: 20871596
  26. Leukaemogenesis: more than mutant genes.
    Nat Rev Cancer. 2010 Jan;10(1):23-36 PMID: 20029422
  27. Suppression of inflammation by a synthetic histone mimic.
    Nature. 2010 Dec 23;468(7327):1119-23 PMID: 21068722
  28. Transformation from committed progenitor to leukaemia stem cell initiated by MLL-AF9.
    Nature. 2006 Aug 17;442(7104):818-22 PMID: 16862118
  29. The double bromodomain-containing chromatin adaptor Brd4 and transcriptional regulation.
    J Biol Chem. 2007 May 4;282(18):13141-5 PMID: 17329240
  30. BRD4-NUT fusion oncogene: a novel mechanism in aggressive carcinoma.
    Cancer Res. 2003 Jan 15;63(2):304-7 PMID: 12543779
  31. The molecular basis of leukemia.
    Hematology Am Soc Hematol Educ Program. 2004;:80-97 PMID: 15561678
  32. DOT1L/KMT4 recruitment and H3K79 methylation are ubiquitously coupled with gene transcription in mammalian cells.
    Mol Cell Biol. 2008 Apr;28(8):2825-39 PMID: 18285465
  33. The menin tumor suppressor protein is an essential oncogenic cofactor for MLL-associated leukemogenesis.
    Cell. 2005 Oct 21;123(2):207-18 PMID: 16239140
  34. Reversible tumorigenesis by MYC in hematopoietic lineages.
    Mol Cell. 1999 Aug;4(2):199-207 PMID: 10488335
  35. Mutation in TET2 in myeloid cancers.
    N Engl J Med. 2009 May 28;360(22):2289-301 PMID: 19474426
  36. Covalent histone modifications--miswritten, misinterpreted and mis-erased in human cancers.
    Nat Rev Cancer. 2010 Jul;10(7):457-69 PMID: 20574448
  37. c-Myc controls the balance between hematopoietic stem cell self-renewal and differentiation.
    Genes Dev. 2004 Nov 15;18(22):2747-63 PMID: 15545632
  38. In vivo dual cross-linking for identification of indirect DNA-associated proteins by chromatin immunoprecipitation.
    Biotechniques. 2006 Dec;41(6):694, 696, 698 PMID: 17191611
  39. Mouse models of human AML accurately predict chemotherapy response.
    Genes Dev. 2009 Apr 1;23(7):877-89 PMID: 19339691
  40. The miR-17-92 microRNA polycistron regulates MLL leukemia stem cell potential by modulating p21 expression.
    Cancer Res. 2010 May 1;70(9):3833-42 PMID: 20406979
  41. Brd4 recruits P-TEFb to chromosomes at late mitosis to promote G1 gene expression and cell cycle progression.
    Mol Cell Biol. 2008 Feb;28(3):967-76 PMID: 18039861
Article Info
Journal
Nature
Abbr.
Nature
ISSN
1476-4687
Published
2011-08-03
Epub
2011-00-03
Pages
524-8
Language
English
Region
England
NLM ID
0410462
PMCID
PMC3328300
Subset
IM
Grants
Howard Hughes Medical Institute · United States
NCI NIH HHS · K08 CA128972 · United States
Databases
GEO
Analysis Services
Analysis Services

Contact

No. 2 Wenbo Road, Zhangqiu District, Jinan, Shandong

Qilu Normal University · Genelibs Bioinformatics Lab

750 Shunhua Rd, Jinan

2F, Bldg F, University Science Park

Tel: 0531-88819269

WeChat Official Account

Follow our WeChat subscription account for real-time updates and the latest in medical and biological research.


Business Email

E-mail: product@genelibs.com