Home LiteratureArticle Details
PMID: 21763483 Published · ppublish English Journal Article Research Support, Non-U.S. Gov't

A mutation in VPS35, encoding a subunit of the retromer complex, causes late-onset Parkinson disease.

American journal of human genetics ·Vol. 89 ·No. 1 ·2011-07-15 ·Pages 168-75

Zimprich A, Benet-Pagès A, Struhal W, Graf E, Eck SH, Offman MN, Haubenberger D, Spielberger S, Schulte EC, Lichtner P, Rossle SC, Klopp N, Wolf E, Seppi K, Pirker W, Presslauer S, Mollenhauer B, Katzenschlager R, Foki T, Hotzy C, Reinthaler E, Harutyunyan A, Kralovics R, Peters A, Zimprich F, Brücke T, Poewe W, Auff E, Trenkwalder C, Rost B, Ransmayr G, Winkelmann J, Meitinger T, Strom TM

Abstract

To identify rare causal variants in late-onset Parkinson disease (PD), we investigated an Austrian family with 16 affected individuals by exome sequencing. We found a missense mutation, c.1858G>A (p.Asp620Asn), in the VPS35 gene in all seven affected family members who are alive. By screening additional PD cases, we saw the same variant cosegregating with the disease in an autosomal-dominant mode with high but incomplete penetrance in two further families with five and ten affected members, respectively. The mean age of onset in the affected individuals was 53 years. Genotyping showed that the shared haplotype extends across 65 kilobases around VPS35. Screening the entire VPS35 coding sequence in an additional 860 cases and 1014 controls revealed six further nonsynonymous missense variants. Three were only present in cases, two were only present in controls, and one was present in cases and controls. The familial mutation p.Asp620Asn and a further variant, c.1570C>T (p.Arg524Trp), detected in a sporadic PD case were predicted to be damaging by sequence-based and molecular-dynamics analyses. VPS35 is a component of the retromer complex and mediates retrograde transport between endosomes and the trans-Golgi network, and it has recently been found to be involved in Alzheimer disease.

MeSH Terms
Adult Age of Onset Aged Aged, 80 and over Cohort Studies Endosomes/genetics,metabolism Female Genetic Variation Haplotypes Humans Hydrogen Bonding Male Middle Aged Mutation, Missense Parkinson Disease/genetics,metabolism Pedigree Protein Conformation Vesicular Transport Proteins/genetics,metabolism trans-Golgi Network/metabolism
Chemicals
VPS35 protein, human Vesicular Transport Proteins
Authors & Affiliations
34 authors, click to expand affiliations / ORCID
Zimprich Alexander
Department of Neurology, Medizinische Universität Wien, Vienna, Austria. alexander.zimprich@meduniwien.ac.at
Benet-Pagès Anna
Struhal Walter
Graf Elisabeth
Eck Sebastian H
Offman Marc N
Haubenberger Dietrich
Spielberger Sabine
Schulte Eva C
Lichtner Peter
Rossle Shaila C
Klopp Norman
Wolf Elisabeth
Seppi Klaus
Pirker Walter
Presslauer Stefan
Mollenhauer Brit
Katzenschlager Regina
Foki Thomas
Hotzy Christoph
Reinthaler Eva
Harutyunyan Ashot
Kralovics Robert
Peters Annette
Zimprich Fritz
Brücke Thomas
Poewe Werner
Auff Eduard
Trenkwalder Claudia
Rost Burkhard
Ransmayr Gerhard
Winkelmann Juliane
Meitinger Thomas
Strom Tim M
References (35)
35 references, click to expand
  1. Mutation in the alpha-synuclein gene identified in families with Parkinson's disease.
    Science. 1997 Jun 27;276(5321):2045-7 PMID: 9197268
  2. A common LRRK2 mutation in idiopathic Parkinson's disease.
    Lancet. 2005 Jan 29-Feb 4;365(9457):415-6 PMID: 15680457
  3. Multicenter analysis of glucocerebrosidase mutations in Parkinson's disease.
    N Engl J Med. 2009 Oct 22;361(17):1651-61 PMID: 19846850
  4. Cloning of the gene containing mutations that cause PARK8-linked Parkinson's disease.
    Neuron. 2004 Nov 18;44(4):595-600 PMID: 15541308
  5. Genome-wide association study reveals genetic risk underlying Parkinson's disease.
    Nat Genet. 2009 Dec;41(12):1308-12 PMID: 19915575
  6. Vps35 mediates vesicle transport between the mitochondria and peroxisomes.
    Curr Biol. 2010 Jul 27;20(14):1310-5 PMID: 20619655
  7. Mutations in the parkin gene cause autosomal recessive juvenile parkinsonism.
    Nature. 1998 Apr 9;392(6676):605-8 PMID: 9560156
  8. KORA-gen--resource for population genetics, controls and a broad spectrum of disease phenotypes.
    Gesundheitswesen. 2005 Aug;67 Suppl 1:S26-30 PMID: 16032514
  9. The neuronal sortilin-related receptor SORL1 is genetically associated with Alzheimer disease.
    Nat Genet. 2007 Feb;39(2):168-77 PMID: 17220890
  10. A point-charge force field for molecular mechanics simulations of proteins based on condensed-phase quantum mechanical calculations.
    J Comput Chem. 2003 Dec;24(16):1999-2012 PMID: 14531054
  11. GROMACS 4:  Algorithms for Highly Efficient, Load-Balanced, and Scalable Molecular Simulation.
    J Chem Theory Comput. 2008 Mar;4(3):435-47 PMID: 26620784
  12. Genetic screening for a single common LRRK2 mutation in familial Parkinson's disease.
    Lancet. 2005 Jan 29-Feb 4;365(9457):410-2 PMID: 15680455
  13. Mutations in the DJ-1 gene associated with autosomal recessive early-onset parkinsonism.
    Science. 2003 Jan 10;299(5604):256-9 PMID: 12446870
  14. Interchangeable but essential functions of SNX1 and SNX2 in the association of retromer with endosomes and the trafficking of mannose 6-phosphate receptors.
    Mol Cell Biol. 2007 Feb;27(3):1112-24 PMID: 17101778
  15. Imputation of sequence variants for identification of genetic risks for Parkinson's disease: a meta-analysis of genome-wide association studies.
    Lancet. 2011 Feb 19;377(9766):641-9 PMID: 21292315
  16. SNCA multiplication is not a common cause of Parkinson disease or dementia with Lewy bodies.
    Neurology. 2004 Aug 10;63(3):554-6 PMID: 15304594
  17. Improved prediction of protein side-chain conformations with SCWRL4.
    Proteins. 2009 Dec;77(4):778-95 PMID: 19603484
  18. Mutations in LRRK2 cause autosomal-dominant parkinsonism with pleomorphic pathology.
    Neuron. 2004 Nov 18;44(4):601-7 PMID: 15541309
  19. Human non-synonymous SNPs: server and survey.
    Nucleic Acids Res. 2002 Sep 1;30(17):3894-900 PMID: 12202775
  20. Mutations in the glucocerebrosidase gene and Parkinson's disease in Ashkenazi Jews.
    N Engl J Med. 2004 Nov 4;351(19):1972-7 PMID: 15525722
  21. Genome-wide association study identifies common variants at four loci as genetic risk factors for Parkinson's disease.
    Nat Genet. 2009 Dec;41(12):1303-7 PMID: 19915576
  22. Parkinson's disease. First of two parts.
    N Engl J Med. 1998 Oct 8;339(15):1044-53 PMID: 9761807
  23. Merlin--rapid analysis of dense genetic maps using sparse gene flow trees.
    Nat Genet. 2002 Jan;30(1):97-101 PMID: 11731797
  24. VPS10P-domain receptors - regulators of neuronal viability and function.
    Nat Rev Neurosci. 2008 Dec;9(12):899-909 PMID: 19002190
  25. SNAP: predict effect of non-synonymous polymorphisms on function.
    Nucleic Acids Res. 2007;35(11):3823-35 PMID: 17526529
  26. Accuracy of clinical diagnosis of idiopathic Parkinson's disease: a clinico-pathological study of 100 cases.
    J Neurol Neurosurg Psychiatry. 1992 Mar;55(3):181-4 PMID: 1564476
  27. Familial Parkinson's disease: a clinical genetic analysis.
    Can J Neurol Sci. 1995 Nov;22(4):272-9 PMID: 8599769
  28. A frequent LRRK2 gene mutation associated with autosomal dominant Parkinson's disease.
    Lancet. 2005 Jan 29-Feb 4;365(9457):412-5 PMID: 15680456
  29. A method and server for predicting damaging missense mutations.
    Nat Methods. 2010 Apr;7(4):248-9 PMID: 20354512
  30. Hereditary early-onset Parkinson's disease caused by mutations in PINK1.
    Science. 2004 May 21;304(5674):1158-60 PMID: 15087508
  31. The human Vps29 retromer component is a metallo-phosphoesterase for a cation-independent mannose 6-phosphate receptor substrate peptide.
    Biochem J. 2006 Sep 15;398(3):399-409 PMID: 16737443
  32. Drosophila Vps35 function is necessary for normal endocytic trafficking and actin cytoskeleton organisation.
    J Cell Sci. 2007 Dec 15;120(Pt 24):4367-76 PMID: 18057029
  33. Increased risk of Parkinson's disease in parents and siblings of patients.
    Ann Neurol. 1994 Oct;36(4):659-61 PMID: 7605419
  34. Functional architecture of the retromer cargo-recognition complex.
    Nature. 2007 Oct 25;449(7165):1063-7 PMID: 17891154
  35. Retrograde transport from endosomes to the trans-Golgi network.
    Nat Rev Mol Cell Biol. 2006 Aug;7(8):568-79 PMID: 16936697
Article Info
Journal
American journal of human genetics
Abbr.
Am J Hum Genet
ISSN
1537-6605
Published
2011-07-15
Pages
168-75
Language
English
Region
United States
NLM ID
0370475
PMCID
PMC3135812
Subset
IM
Analysis Services
Analysis Services

Contact

No. 2 Wenbo Road, Zhangqiu District, Jinan, Shandong

Qilu Normal University · Genelibs Bioinformatics Lab

750 Shunhua Rd, Jinan

2F, Bldg F, University Science Park

Tel: 0531-88819269

WeChat Official Account

Follow our WeChat subscription account for real-time updates and the latest in medical and biological research.


Business Email

E-mail: product@genelibs.com