Home LiteratureArticle Details
PMID: 2165475 Published · ppublish English Comparative Study Journal Article Research Support, Non-U.S. Gov't

Glyceraldehyde-3-phosphate dehydrogenase from the hyperthermophilic archaebacterium Pyrococcus woesei: characterization of the enzyme, cloning and sequencing of the gene, and expression in Escherichia coli.

Journal of bacteriology ·Vol. 172 ·No. 8 ·1990-08-00 ·Pages 4329-38

Zwickl P, Fabry S, Bogedain C, Haas A, Hensel R

Abstract

The glyceraldehyde-3-phosphate dehydrogenase from the hyperthermophilic archaebacterium Pyrococcus woesei (optimal growth temperature, 100 to 103 degrees C) was purified to homogeneity. This enzyme was strictly phosphate dependent, utilized either NAD+ or NADP+, and was insensitive to pentalenolactone like the enzyme from the methanogenic archaebacterium Methanothermus fervidus. The enzyme exhibited a considerable thermostability, with a 44-min half-life at 100 degrees C. The amino acid sequence of the glyceraldehyde-3-phosphate dehydrogenase from P. woesei was deduced from the nucleotide sequence of the coding gene. Compared with the enzyme homologs from mesophilic archaebacteria (Methanobacterium bryantii, Methanobacterium formicicum) and an extremely thermophilic archaebacterium (Methanothermus fervidus), the primary structure of the P. woesei enzyme exhibited a strikingly high proportion of aromatic amino acid residues and a low proportion of sulfur-containing residues. The coding gene of P. woesei was expressed at a high level in Escherichia coli, thus providing an ideal basis for detailed structural and functional studies of that enzyme.

MeSH Terms
Amino Acid Sequence Archaea/enzymology,genetics Bacteria/enzymology Base Sequence Cloning, Molecular DNA Restriction Enzymes DNA, Bacterial/genetics,isolation & purification Enzyme Stability Escherichia coli/genetics Gene Expression Genes, Bacterial Glyceraldehyde-3-Phosphate Dehydrogenases/genetics,isolation & purification,metabolism Hot Temperature Molecular Sequence Data Plasmids Protein Conformation Restriction Mapping Sequence Homology, Nucleic Acid Species Specificity
Chemicals
DNA, Bacterial Glyceraldehyde-3-Phosphate Dehydrogenases DNA Restriction Enzymes
Authors & Affiliations
5 authors, click to expand affiliations / ORCID
Zwickl P
Max-Planck-Institut für Biochemie, Martinsried, Federal Republic of Germany.
Fabry S
Bogedain C
Haas A
Hensel R
References (34)
34 references, click to expand
  1. Relationship of protein flexibility to thermostability.
    Protein Eng. 1987 Dec;1(6):477-80 PMID: 3508295
  2. Characterization of hydrogenase from the hyperthermophilic archaebacterium, Pyrococcus furiosus.
    J Biol Chem. 1989 Mar 25;264(9):5070-9 PMID: 2538471
  3. Nucleotide sequence determination of the DNA region coding for Bacillus stearothermophilus glyceraldehyde-3-phosphate dehydrogenase and of the flanking DNA regions required for its expression in Escherichia coli.
    Gene. 1989 Jan 30;75(1):145-55 PMID: 2656407
  4. A novel and remarkably thermostable ferredoxin from the hyperthermophilic archaebacterium Pyrococcus furiosus.
    J Bacteriol. 1989 Jun;171(6):3433-9 PMID: 2542225
  5. Identification, molecular cloning and sequence analysis of a gene cluster encoding the class II fructose 1,6-bisphosphate aldolase, 3-phosphoglycerate kinase and a putative second glyceraldehyde 3-phosphate dehydrogenase of Escherichia coli.
    Mol Microbiol. 1989 Jun;3(6):723-32 PMID: 2546007
  6. Nucleotide sequence of the glyceraldehyde-3-phosphate dehydrogenase gene from Thermus aquaticus YT1.
    Nucleic Acids Res. 1989 Dec 11;17(23):10123 PMID: 2602126
  7. Rooting the archaebacterial tree: the pivotal role of Thermococcus celer in archaebacterial evolution.
    Syst Appl Microbiol. 1988;10:231-40 PMID: 11542150
  8. Detection of specific sequences among DNA fragments separated by gel electrophoresis.
    J Mol Biol. 1975 Nov 5;98(3):503-17 PMID: 1195397
  9. Sequence and structure of D-glyceraldehyde 3-phosphate dehydrogenase from Bacillus stearothermophilus.
    Nature. 1977 Mar 24;266(5600):328-33 PMID: 193030
  10. DNA sequencing with chain-terminating inhibitors.
    Proc Natl Acad Sci U S A. 1977 Dec;74(12):5463-7 PMID: 271968
  11. Arenaemycin (pentalenolactone): a specific inhibitor of glycolysis.
    FEBS Lett. 1978 Sep 15;93(2):339-42 PMID: 361434
  12. Thermal stability and protein structure.
    Biochemistry. 1979 Dec 11;18(25):5698-703 PMID: 518863
  13. D-glyceraldehyde-3-phosphate dehydrogenase. Amino-acid sequence of the enzyme from the extreme thermophile Thermus aquaticus.
    Eur J Biochem. 1980 Jul;108(2):567-79 PMID: 6773768
  14. Protein thermostability. Correlations between calculated macroscopic parameters and growth temperature for closely related thermophilic and mesophilic bacilli.
    Int J Pept Protein Res. 1981 Nov;18(5):430-42 PMID: 7341526
  15. Nucleotide sequences of cloned cDNA fragments specific for six Xenopus laevis ribosomal proteins.
    Gene. 1982 Mar;17(3):311-6 PMID: 7049839
  16. An improved strategy for rapid direct sequencing of both strands of long DNA molecules cloned in a plasmid.
    Nucleic Acids Res. 1983 Aug 25;11(16):5521-40 PMID: 6310503
  17. Construction of improved M13 vectors using oligodeoxynucleotide-directed mutagenesis.
    Gene. 1983 Dec;26(1):101-6 PMID: 6323249
  18. Aromatic-aromatic interaction: a mechanism of protein structure stabilization.
    Science. 1985 Jul 5;229(4708):23-8 PMID: 3892686
  19. Nucleotide sequence of cloned cDNA specific for rat ribosomal protein L35a.
    Eur J Biochem. 1986 Feb 3;154(3):523-7 PMID: 3753935
  20. The primary structure of Bacillus cereus neutral proteinase and comparison with thermolysin and Bacillus subtilis neutral proteinase.
    Biol Chem Hoppe Seyler. 1986 Jul;367(7):643-57 PMID: 3092843
  21. Molecular cloning of the plasmid RP4 primase region in a multi-host-range tacP expression vector.
    Gene. 1986;48(1):119-31 PMID: 3549457
  22. Purification and characterization of D-glyceraldehyde-3-phosphate dehydrogenase from the thermophilic archaebacterium Methanothermus fervidus.
    Eur J Biochem. 1987 May 15;165(1):147-55 PMID: 3569291
  23. Structure of holo-glyceraldehyde-3-phosphate dehydrogenase from Bacillus stearothermophilus at 1.8 A resolution.
    J Mol Biol. 1987 Jan 5;193(1):171-87 PMID: 3586018
  24. Glyceraldehyde-3-phosphate dehydrogenase gene from Zymomonas mobilis: cloning, sequencing, and identification of promoter region.
    J Bacteriol. 1987 Dec;169(12):5653-62 PMID: 3680173
  25. Crystal structure of neutral protease from Bacillus cereus refined at 3.0 A resolution and comparison with the homologous but more thermostable enzyme thermolysin.
    J Mol Biol. 1988 Feb 5;199(3):525-37 PMID: 3127592
  26. Temperature adaptation of lactate dehydrogenase. Structural, functional and genetic aspects.
    Biophys Chem. 1988 Feb;29(1-2):171-9 PMID: 3282559
  27. Transcription termination in the archaebacterium Sulfolobus: signal structures and linkage to transcription initiation.
    Nucleic Acids Res. 1988 Mar 25;16(6):2445-59 PMID: 3129698
  28. Primary structure of glyceraldehyde-3-phosphate dehydrogenase deduced from the nucleotide sequence of the thermophilic archaebacterium Methanothermus fervidus.
    Gene. 1988 Apr 29;64(2):189-97 PMID: 2841192
  29. A new siliconized-glass fiber as support for protein-chemical analysis of electroblotted proteins.
    Eur J Biochem. 1988 Oct 1;176(3):509-19 PMID: 2458922
  30. Expression of the glyceraldehyde-3-phosphate dehydrogenase gene from the extremely thermophilic archaebacterium Methanothermus fervidus in E. coli. Enzyme purification, crystallization, and preliminary crystal data.
    FEBS Lett. 1988 Sep 12;237(1-2):213-7 PMID: 3049151
  31. Nucleotide sequence of the phosphoglycerate kinase gene from the extreme thermophile Thermus thermophilus. Comparison of the deduced amino acid sequence with that of the mesophilic yeast phosphoglycerate kinase.
    Biochem J. 1988 Sep 1;254(2):509-17 PMID: 3052437
  32. Nucleotide sequence of the glyceraldehyde-3-phosphate dehydrogenase gene from the mesophilic methanogenic archaebacteria Methanobacterium bryantii and Methanobacterium formicicum. Comparison with the respective gene structure of the closely related extreme thermophile Methanothermus fervidus.
    Eur J Biochem. 1989 Feb 1;179(2):405-13 PMID: 2492940
  33. Sequence of the glyceraldehyde-3-phosphate dehydrogenase gene from Bacillus subtilis.
    Nucleic Acids Res. 1989 Feb 11;17(3):1251 PMID: 2493629
  34. Engineering protein thermal stability. Sequence statistics point to residue substitutions in alpha-helices.
    J Mol Biol. 1989 Mar 20;206(2):397-406 PMID: 2716053
Article Info
Journal
Journal of bacteriology
Abbr.
J Bacteriol
ISSN
0021-9193
Published
1990-08-00
Pages
4329-38
Language
English
Region
United States
NLM ID
2985120R
PMCID
PMC213258
Subset
IM
Analysis Services
Analysis Services

Contact

No. 2 Wenbo Road, Zhangqiu District, Jinan, Shandong

Qilu Normal University · Genelibs Bioinformatics Lab

750 Shunhua Rd, Jinan

2F, Bldg F, University Science Park

Tel: 0531-88819269

WeChat Official Account

Follow our WeChat subscription account for real-time updates and the latest in medical and biological research.


Business Email

E-mail: product@genelibs.com