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PMID: 21625585 Published · ppublish English Journal Article Research Support, Non-U.S. Gov't

Transcriptional activators of human genes with programmable DNA-specificity.

PloS one ·Vol. 6 ·No. 5 ·2011-00-00 ·Pages e19509

Geissler R, Scholze H, Hahn S, Streubel J, Bonas U, Behrens SE, Boch J

Abstract

TAL (transcription activator-like) effectors are translocated by Xanthomonas bacteria into plant cells where they activate transcription of target genes. DNA target sequence recognition occurs in a unique mode involving a central domain of tandem repeats. Each repeat recognizes a single base pair in a contiguous DNA sequence and a pair of adjacent hypervariable amino acid residues per repeat specifies which base is bound. Rearranging the repeats allows the design of novel TAL proteins with predictable DNA-recognition specificities. TAL protein-based transcriptional activation in plant cells is mediated by a C-terminal activation domain (AD). Here, we created synthetic TAL proteins with designed repeat compositions using a novel modular cloning strategy termed "Golden TAL Technology". Newly programmed TAL proteins were not only functional in plant cells, but also in human cells and activated targeted expression of exogenous as well as endogenous genes. Transcriptional activation in different human cell lines was markedly improved by replacing the TAL-AD with the VP16-AD of herpes simplex virus. The creation of TAL proteins with potentially any desired DNA-recognition specificity allows their versatile use in biotechnology.

MeSH Terms
Apoptosis Regulatory Proteins/genetics,metabolism Blotting, Western DNA/genetics,metabolism DNA-Binding Proteins/chemistry,genetics,metabolism HeLa Cells Herpes Simplex Virus Protein Vmw65/genetics Humans Interferon-alpha/genetics,metabolism Interferon-beta/genetics,metabolism Kidney/cytology,metabolism Luciferases/metabolism Proto-Oncogene Proteins/genetics,metabolism RNA, Messenger/genetics Repetitive Sequences, Amino Acid Reverse Transcriptase Polymerase Chain Reaction Transcriptional Activation Virulence Factors/genetics,metabolism
Chemicals
Apoptosis Regulatory Proteins BBC3 protein, human DNA-Binding Proteins Herpes Simplex Virus Protein Vmw65 Interferon-alpha Proto-Oncogene Proteins RNA, Messenger Virulence Factors Interferon-beta DNA Luciferases
Authors & Affiliations
7 authors, click to expand affiliations / ORCID
Geissler René
Section Microbial Biotechnology, Institute of Biochemistry and Biotechnology, Martin-Luther-University Halle-Wittenberg, Halle (Saale), Germany.
Scholze Heidi
Hahn Simone
Streubel Jana
Bonas Ulla
Behrens Sven-Erik
Boch Jens
References (38)
38 references, click to expand
  1. Breaking the code of DNA binding specificity of TAL-type III effectors.
    Science. 2009 Dec 11;326(5959):1509-12 PMID: 19933107
  2. A bacterial effector acts as a plant transcription factor and induces a cell size regulator.
    Science. 2007 Oct 26;318(5850):648-51 PMID: 17962565
  3. The C terminus of AvrXa10 can be replaced by the transcriptional activation domain of VP16 from the herpes simplex virus.
    Plant Cell. 1999 Sep;11(9):1665-74 PMID: 10488234
  4. The discovery of zinc fingers and their applications in gene regulation and genome manipulation.
    Annu Rev Biochem. 2010;79:213-31 PMID: 20192761
  5. A simple cipher governs DNA recognition by TAL effectors.
    Science. 2009 Dec 11;326(5959):1501 PMID: 19933106
  6. Efficient construction of sequence-specific TAL effectors for modulating mammalian transcription.
    Nat Biotechnol. 2011 Feb;29(2):149-53 PMID: 21248753
  7. Characterization of AvrBs3-like effectors from a Brassicaceae pathogen reveals virulence and avirulence activities and a protein with a novel repeat architecture.
    Mol Plant Microbe Interact. 2005 Aug;18(8):838-48 PMID: 16134896
  8. Golden gate shuffling: a one-pot DNA shuffling method based on type IIs restriction enzymes.
    PLoS One. 2009;4(5):e5553 PMID: 19436741
  9. Eukaryotic features of the Xanthomonas type III effector AvrBs3: protein domains involved in transcriptional activation and the interaction with nuclear import receptors from pepper.
    Plant J. 2001 Jun;26(5):523-34 PMID: 11439138
  10. Host and pathogen factors controlling the rice-Xanthomonas oryzae interaction.
    Plant Physiol. 2009 Aug;150(4):1677-86 PMID: 19458115
  11. Detailed analysis of the DNA recognition motifs of the Xanthomonas type III effectors AvrBs3 and AvrBs3Deltarep16.
    Plant J. 2009 Sep;59(6):859-71 PMID: 19473322
  12. The herpes simplex virus VP16-induced complex: the makings of a regulatory switch.
    Trends Biochem Sci. 2003 Jun;28(6):294-304 PMID: 12826401
  13. Enhanced protein production by engineered zinc finger proteins.
    Biotechnol Bioeng. 2007 Aug 1;97(5):1180-9 PMID: 17171718
  14. PUMA induces the rapid apoptosis of colorectal cancer cells.
    Mol Cell. 2001 Mar;7(3):673-82 PMID: 11463391
  15. Recognition of the bacterial avirulence protein AvrBs3 occurs inside the host plant cell.
    Cell. 1996 Dec 27;87(7):1307-16 PMID: 8980236
  16. Genome editing with engineered zinc finger nucleases.
    Nat Rev Genet. 2010 Sep;11(9):636-46 PMID: 20717154
  17. De novo-engineered transcription activator-like effector (TALE) hybrid nuclease with novel DNA binding specificity creates double-strand breaks.
    Proc Natl Acad Sci U S A. 2011 Feb 8;108(6):2623-8 PMID: 21262818
  18. Rice xa13 recessive resistance to bacterial blight is defeated by induction of the disease susceptibility gene Os-11N3.
    Plant Cell. 2010 Nov;22(11):3864-76 PMID: 21098734
  19. A TALE nuclease architecture for efficient genome editing.
    Nat Biotechnol. 2011 Feb;29(2):143-8 PMID: 21179091
  20. Targeting DNA double-strand breaks with TAL effector nucleases.
    Genetics. 2010 Oct;186(2):757-61 PMID: 20660643
  21. Promoter elements of rice susceptibility genes are bound and activated by specific TAL effectors from the bacterial blight pathogen, Xanthomonas oryzae pv. oryzae.
    New Phytol. 2010 Sep;187(4):1048-1057 PMID: 20345643
  22. Nuclear factors are involved in hepatitis C virus RNA replication.
    RNA. 2007 Oct;13(10):1675-92 PMID: 17684232
  23. Expression levels of avrBs3-like genes affect recognition specificity in tomato Bs4- but not in pepper Bs3-mediated perception.
    Mol Plant Microbe Interact. 2005 Nov;18(11):1215-25 PMID: 16353556
  24. Regulation of selected genome loci using de novo-engineered transcription activator-like effector (TALE)-type transcription factors.
    Proc Natl Acad Sci U S A. 2010 Dec 14;107(50):21617-22 PMID: 21106758
  25. Plant pathogen recognition mediated by promoter activation of the pepper Bs3 resistance gene.
    Science. 2007 Oct 26;318(5850):645-8 PMID: 17962564
  26. New lessons about old molecules: how type I interferons shape Th1/Th17-mediated autoimmunity in the CNS.
    Trends Mol Med. 2010 Aug;16(8):379-86 PMID: 20591737
  27. AvrXa10 contains an acidic transcriptional activation domain in the functionally conserved C terminus.
    Mol Plant Microbe Interact. 1998 Aug;11(8):824-32 PMID: 9675896
  28. Hybrid restriction enzymes: zinc finger fusions to Fok I cleavage domain.
    Proc Natl Acad Sci U S A. 1996 Feb 6;93(3):1156-60 PMID: 8577732
  29. Xanthomonas AvrBs3 family-type III effectors: discovery and function.
    Annu Rev Phytopathol. 2010;48:419-36 PMID: 19400638
  30. TAL effector-DNA specificity.
    Virulence. 2010 Sep-Oct;1(5):428-32 PMID: 21178484
  31. A one pot, one step, precision cloning method with high throughput capability.
    PLoS One. 2008;3(11):e3647 PMID: 18985154
  32. Fifty years of interferon research: aiming at a moving target.
    Immunity. 2006 Sep;25(3):343-8 PMID: 16979566
  33. Analysis of relative gene expression data using real-time quantitative PCR and the 2(-Delta Delta C(T)) Method.
    Methods. 2001 Dec;25(4):402-8 PMID: 11846609
  34. PUMA, a novel proapoptotic gene, is induced by p53.
    Mol Cell. 2001 Mar;7(3):683-94 PMID: 11463392
  35. TAL nucleases (TALNs): hybrid proteins composed of TAL effectors and FokI DNA-cleavage domain.
    Nucleic Acids Res. 2011 Jan;39(1):359-72 PMID: 20699274
  36. TAL effectors: finding plant genes for disease and defense.
    Curr Opin Plant Biol. 2010 Aug;13(4):394-401 PMID: 20570209
  37. TAL effectors are remote controls for gene activation.
    Curr Opin Microbiol. 2011 Feb;14(1):47-53 PMID: 21215685
  38. Identification and use of zinc finger transcription factors that increase production of recombinant proteins in yeast and mammalian cells.
    Biotechnol Prog. 2005 May-Jun;21(3):664-70 PMID: 15932240
Article Info
Journal
PloS one
Abbr.
PLoS One
ISSN
1932-6203
Published
2011-00-00
Epub
2011-00-19
Pages
e19509
Language
English
Region
United States
NLM ID
101285081
PMCID
PMC3098229
Subset
IM
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