Home LiteratureArticle Details
PMID: 2160429 Published · ppublish English Journal Article Research Support, Non-U.S. Gov't Research Support, U.S. Gov't, P.H.S.

Identification of Pneumocystis carinii chromosomes and mapping of five genes.

Infection and immunity ·Vol. 58 ·No. 6 ·1990-06-00 ·Pages 1705-10

Lundgren B, Cotton R, Lundgren JD, Edman JC, Kovacs JA

Abstract

Pulsed field gel electrophoresis was used to identify the chromosome-size DNA of Pneumocystis carinii, a major pathogen of immunocompromised patients. Thirteen chromosomes of rodent Pneumocystis carinii, ranging in size from 300 to 700 kilobases (kb), were identified. The minimum genome size for P. carinii, estimated on the basis of the sizes of chromosomes, is 7,000 kb. Genetic heterogeneity among different P. carinii isolates was documented by demonstration of chromosomal size variability. By hybridization studies, the genes for topoisomerase I, dihydrofolate reductase, rRNA, actin, and thymidylate synthase were mapped to single chromosomes of approximately 650, 590, 550, 460, and 350 kb, respectively. Hybridization studies further confirmed the genetic heterogeneity of P. carinii.

MeSH Terms
Actins/genetics Blotting, Southern Chromosome Mapping DNA Topoisomerases, Type I/genetics DNA, Ribosomal/genetics Electrophoresis, Agar Gel/methods Genes, Fungal Pneumocystis/genetics RNA, Ribosomal, 18S/genetics Restriction Mapping Tetrahydrofolate Dehydrogenase/genetics Thymidylate Synthase/genetics
Chemicals
Actins DNA, Ribosomal RNA, Ribosomal, 18S Tetrahydrofolate Dehydrogenase Thymidylate Synthase DNA Topoisomerases, Type I
Authors & Affiliations
5 authors, click to expand affiliations / ORCID
Lundgren B
Critical Care Medicine, National Institutes of Health, National Institute of Alcohol Abuse and Alcoholism, Bethesda, Maryland 20892.
Cotton R
Lundgren J D
Edman J C
Kovacs J A
References (29)
29 references, click to expand
  1. Detection of specific sequences among DNA fragments separated by gel electrophoresis.
    J Mol Biol. 1975 Nov 5;98(3):503-17 PMID: 1195397
  2. An electrophoretic karyotype and assignment of ribosomal genes to resolved chromosomes of Pneumocystis carinii.
    Mol Microbiol. 1989 Nov;3(11):1473-80 PMID: 2615653
  3. Isolation and sequence of the gene for actin in Saccharomyces cerevisiae.
    Proc Natl Acad Sci U S A. 1980 Jul;77(7):3912-6 PMID: 7001447
  4. A technique for radiolabeling DNA restriction endonuclease fragments to high specific activity.
    Anal Biochem. 1983 Jul 1;132(1):6-13 PMID: 6312838
  5. Pneumocystis carinii pneumonia: a comparison between patients with the acquired immunodeficiency syndrome and patients with other immunodeficiencies.
    Ann Intern Med. 1984 May;100(5):663-71 PMID: 6231873
  6. Separation of yeast chromosome-sized DNAs by pulsed field gradient gel electrophoresis.
    Cell. 1984 May;37(1):67-75 PMID: 6373014
  7. Antigenic variation in Trypanosoma brucei analyzed by electrophoretic separation of chromosome-sized DNA molecules.
    Cell. 1984 May;37(1):77-84 PMID: 6202420
  8. Separation of chromosomal DNA molecules from yeast by orthogonal-field-alternation gel electrophoresis.
    Nucleic Acids Res. 1984 Jul 25;12(14):5647-64 PMID: 6379602
  9. Size variation in chromosomes from independent cultured isolates of Plasmodium falciparum.
    Nature. 1985 May 23-29;315(6017):347-50 PMID: 3889657
  10. The molecular karyotype of Leishmania major and mapping of alpha and beta tubulin gene families to multiple unlinked chromosomal loci.
    Nucleic Acids Res. 1985 Jun 11;13(11):4155-69 PMID: 4011445
  11. Cloning, characterization, and sequence of the yeast DNA topoisomerase I gene.
    Proc Natl Acad Sci U S A. 1985 Jul;82(13):4374-8 PMID: 2989818
  12. Chromosome-sized DNA molecules of Plasmodium falciparum.
    Science. 1985 Aug 16;229(4714):658-61 PMID: 3895435
  13. Genetic map of Saccharomyces cerevisiae, edition 9.
    Microbiol Rev. 1985 Sep;49(3):181-213 PMID: 2995780
  14. Improved hybridization assays employing tailed oligonucleotide probes: a direct comparison with 5'-end-labeled oligonucleotide probes and nick-translated plasmid probes.
    Anal Biochem. 1985 Dec;151(2):211-24 PMID: 3913326
  15. Karyotype analysis of Leishmania species and its use in classification and clinical diagnosis.
    Science. 1986 May 9;232(4751):762-5 PMID: 3961502
  16. Analyses of rat Pneumocystis carinii antigens recognized by human and rat antibodies by using western immunoblotting.
    Infect Immun. 1986 Oct;54(1):96-103 PMID: 3531021
  17. Chromosome location of four genes in Leishmania.
    Mol Biochem Parasitol. 1986 Nov;21(2):161-9 PMID: 3785294
  18. A comparison of the antigenic characteristics of rat and human Pneumocystis carinii by immunoblotting.
    J Immunol. 1987 Apr 1;138(7):2257-65 PMID: 3549900
  19. Identification of antigens and antibodies specific for Pneumocystis carinii.
    J Immunol. 1988 Mar 15;140(6):2023-31 PMID: 3257995
  20. Ribosomal RNA sequence shows Pneumocystis carinii to be a member of the fungi.
    Nature. 1988 Aug 11;334(6182):519-22 PMID: 2970013
  21. Purification and initial characterization of a ferret Pneumocystis carinii surface antigen.
    J Infect Dis. 1988 Oct;158(4):848-54 PMID: 3262695
  22. Phylogenetic association of Pneumocystis carinii with the 'Rhizopoda/Myxomycota/Zygomycota group' indicated by comparison of 5S ribosomal RNA sequences.
    Mol Biochem Parasitol. 1989 Jan 15;32(2-3):163-7 PMID: 2784539
  23. Properties of the major antigens of rat and human Pneumocystis carinii.
    Infect Immun. 1989 May;57(5):1547-55 PMID: 2651312
  24. Pneumocystis carinii: sequence from ribosomal RNA implies a close relationship with fungi.
    Exp Parasitol. 1989 May;68(4):450-61 PMID: 2470612
  25. Separation of chromosomes of Cryptococcus neoformans by pulsed field gel electrophoresis.
    Infect Immun. 1989 Sep;57(9):2624-7 PMID: 2668180
  26. Characterization of de novo folate synthesis in Pneumocystis carinii and Toxoplasma gondii: potential for screening therapeutic agents.
    J Infect Dis. 1989 Aug;160(2):312-20 PMID: 2527275
  27. Isolation and expression of the Pneumocystis carinii thymidylate synthase gene.
    Proc Natl Acad Sci U S A. 1989 Sep;86(17):6503-7 PMID: 2671992
  28. Isolation and expression of the Pneumocystis carinii dihydrofolate reductase gene.
    Proc Natl Acad Sci U S A. 1989 Nov;86(22):8625-9 PMID: 2682653
  29. Determination of the nuclear DNA content of Saccharomyces cerevisiae and implications for the organization of DNA in yeast chromosomes.
    J Mol Biol. 1977 Aug 25;114(4):507-26 PMID: 335076
Article Info
Journal
Infection and immunity
Abbr.
Infect Immun
ISSN
0019-9567
Published
1990-06-00
Pages
1705-10
Language
English
Region
United States
NLM ID
0246127
PMCID
PMC258712
Subset
IM
Grants
NIAID NIH HHS · AI 27128 · United States
Analysis Services
Analysis Services

Contact

No. 2 Wenbo Road, Zhangqiu District, Jinan, Shandong

Qilu Normal University · Genelibs Bioinformatics Lab

750 Shunhua Rd, Jinan

2F, Bldg F, University Science Park

Tel: 0531-88819269

WeChat Official Account

Follow our WeChat subscription account for real-time updates and the latest in medical and biological research.


Business Email

E-mail: product@genelibs.com