Home LiteratureArticle Details
PMID: 21327279 Published · ppublish English Journal Article Research Support, N.I.H., Extramural

Rapid characterization and engineering of natural product biosynthetic pathways via DNA assembler.

Molecular bioSystems ·Vol. 7 ·No. 4 ·2011-04-00 ·Pages 1056-9

Shao Z, Luo Y, Zhao H

Abstract

We report a synthetic biology strategy for rapid genetic manipulation of natural product biosynthetic pathways. Based on DNA assembler, this method synthesizes the entire expression vector containing the target biosynthetic pathway and the genetic elements required for DNA maintenance and replication in various hosts in a single-step manner through yeast homologous recombination, offering unprecedented flexibility and versatility in pathway manipulations.

MeSH Terms
Bacteria/genetics,metabolism Biological Products/genetics Biosynthetic Pathways/genetics Genetic Engineering/methods Genetic Vectors/genetics,metabolism Recombination, Genetic Saccharomyces cerevisiae/genetics,metabolism Synthetic Biology
Chemicals
Biological Products
Authors & Affiliations
3 authors, click to expand affiliations / ORCID
Shao Zengyi
Department of Chemical and Biomolecular Engineering, Institute for Genomic Biology, University of Illinois at Urbana-Champaign, Urbana, IL 61801, USA.
Luo Yunzi
Zhao Huimin
References (34)
34 references, click to expand
  1. One-step assembly in yeast of 25 overlapping DNA fragments to form a complete synthetic Mycoplasma genitalium genome.
    Proc Natl Acad Sci U S A. 2008 Dec 23;105(51):20404-9 PMID: 19073939
  2. Cloning and heterologous expression of the spectinabilin biosynthetic gene cluster from Streptomyces spectabilis.
    Mol Biosyst. 2010 Feb;6(2):336-8 PMID: 20094652
  3. Fluostatins produced by the heterologous expression of a TAR reassembled environmental DNA derived type II PKS gene cluster.
    J Am Chem Soc. 2010 Sep 1;132(34):11902-3 PMID: 20690632
  4. A cryptic type I polyketide synthase (cpk) gene cluster in Streptomyces coelicolor A3(2).
    Arch Microbiol. 2007 Feb;187(2):87-99 PMID: 17009021
  5. Plasmid construction by linker-assisted homologous recombination in yeast.
    Biotechniques. 2001 Dec;31(6):1246, 1248, 1250 PMID: 11768649
  6. Recovery and potential utility of YACs as circular YACs/BACs.
    Nucleic Acids Res. 2000 Sep 1;28(17):E81 PMID: 10954614
  7. Unusual transformations in the biosynthesis of the antibiotic phosphinothricin tripeptide.
    Nat Chem Biol. 2007 Aug;3(8):480-5 PMID: 17632514
  8. Drug discovery and natural products: end of an era or an endless frontier?
    Science. 2009 Jul 10;325(5937):161-5 PMID: 19589993
  9. A genetic system for direct selection of gene-positive clones during recombinational cloning in yeast.
    Nucleic Acids Res. 2002 Jan 15;30(2):E8 PMID: 11788734
  10. Regulation of the biosynthesis of the macrolide antibiotic spiramycin in Streptomyces ambofaciens.
    J Bacteriol. 2010 Nov;192(21):5813-21 PMID: 20817767
  11. Crystal structure of the erythromycin polyketide synthase dehydratase.
    J Mol Biol. 2008 Dec 26;384(4):941-53 PMID: 18952099
  12. From natural products discovery to commercialization: a success story.
    J Ind Microbiol Biotechnol. 2006 Jul;33(7):486-95 PMID: 16402247
  13. Strategies for the discovery of new natural products by genome mining.
    Chembiochem. 2009 Mar 2;10(4):625-33 PMID: 19165837
  14. Heterologous production of fosfomycin and identification of the minimal biosynthetic gene cluster.
    Chem Biol. 2006 Nov;13(11):1171-82 PMID: 17113999
  15. Creation of a bacterial cell controlled by a chemically synthesized genome.
    Science. 2010 Jul 2;329(5987):52-6 PMID: 20488990
  16. Analysis of the indanomycin biosynthetic gene cluster from Streptomyces antibioticus NRRL 8167.
    Chembiochem. 2009 Apr 17;10(6):1064-72 PMID: 19301315
  17. Coupling homologous recombination with growth selection in yeast: a tool for construction of random DNA sequence libraries.
    Biotechniques. 2004 Aug;37(2):202, 204, 206 PMID: 15335209
  18. Non-colinear polyketide biosynthesis in the aureothin and neoaureothin pathways: an evolutionary perspective.
    Chembiochem. 2007 Oct 15;8(15):1841-9 PMID: 17763486
  19. Polyketide biosynthesis: a millennium review.
    Nat Prod Rep. 2001 Aug;18(4):380-416 PMID: 11548049
  20. Strategies to unravel the function of orphan biosynthesis pathways: recent examples and future prospects.
    Appl Microbiol Biotechnol. 2007 May;75(2):267-77 PMID: 17340107
  21. A type I/type III polyketide synthase hybrid biosynthetic pathway for the structurally unique ansa compound kendomycin.
    Chembiochem. 2008 Nov 3;9(16):2711-21 PMID: 18972512
  22. Natural products as sources of new drugs over the last 25 years.
    J Nat Prod. 2007 Mar;70(3):461-77 PMID: 17309302
  23. Cloning, expression, and biochemical characterization of Streptomyces rubellomurinus genes required for biosynthesis of antimalarial compound FR900098.
    Chem Biol. 2008 Aug 25;15(8):765-70 PMID: 18721747
  24. Mining microbial genomes for new natural products and biosynthetic pathways.
    Microbiology (Reading). 2008 Jun;154(Pt 6):1555-1569 PMID: 18524911
  25. Biodiversity as a source of innovation in biotechnology.
    Annu Rev Microbiol. 1992;46:219-52 PMID: 1444255
  26. Cultivation of recalcitrant microbes: cells are alive, well and revealing their secrets in the 21st century laboratory.
    Curr Opin Microbiol. 2003 Jun;6(3):274-81 PMID: 12831904
  27. General method for plasmid construction using homologous recombination.
    Biotechniques. 1999 Jan;26(1):134-8, 140-1 PMID: 9894602
  28. Iteration as programmed event during polyketide assembly; molecular analysis of the aureothin biosynthesis gene cluster.
    Chem Biol. 2003 Dec;10(12):1225-32 PMID: 14700630
  29. Hidden function of catalytic domain in 6-methylsalicylic acid synthase for product release.
    J Biol Chem. 2010 May 14;285(20):15637-15643 PMID: 20304931
  30. 2-Alkyl-4-hydroxymethylfuran-3-carboxylic acids, antibiotic production inducers discovered by Streptomyces coelicolor genome mining.
    Proc Natl Acad Sci U S A. 2008 Nov 11;105(45):17510-5 PMID: 18988741
  31. A general cloning system to selectively isolate any eukaryotic or prokaryotic genomic region in yeast.
    BMC Genomics. 2003 Apr 29;4(1):16 PMID: 12720573
  32. DNA assembler, an in vivo genetic method for rapid construction of biochemical pathways.
    Nucleic Acids Res. 2009 Feb;37(2):e16 PMID: 19074487
  33. Deciphering pactamycin biosynthesis and engineered production of new pactamycin analogues.
    Chembiochem. 2009 Sep 4;10(13):2253-65 PMID: 19670201
  34. Potent in vitro antimalarial activity of metacycloprodigiosin isolated from Streptomyces spectabilis BCC 4785.
    Antimicrob Agents Chemother. 2002 Apr;46(4):1112-3 PMID: 11897600
Article Info
Journal
Molecular bioSystems
Abbr.
Mol Biosyst
ISSN
1742-2051
Published
2011-04-00
Epub
2011-00-16
Pages
1056-9
Language
English
Region
England
NLM ID
101251620
PMCID
PMC4320646
Subset
IM
Grants
NIGMS NIH HHS · P01 GM077596 · United States
NIGMS NIH HHS · GM077596 · United States
Analysis Services
Analysis Services

Contact

No. 2 Wenbo Road, Zhangqiu District, Jinan, Shandong

Qilu Normal University · Genelibs Bioinformatics Lab

750 Shunhua Rd, Jinan

2F, Bldg F, University Science Park

Tel: 0531-88819269

WeChat Official Account

Follow our WeChat subscription account for real-time updates and the latest in medical and biological research.


Business Email

E-mail: product@genelibs.com