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PMID: 2114012 Published · ppublish English Journal Article Research Support, Non-U.S. Gov't

A human immunoglobulin kappa orphon without sequence defects may be the product of a pericentric inversion.

Nucleic acids research ·Vol. 18 ·No. 12 ·1990-06-25 ·Pages 3475-8

Huber C, Thiebe R, Hameister H, Smola H, Lötscher E, Zachau HG

Abstract

The VK gene segments that have been transposed from the kappa locus on the short arm of chromosome 2 at 2p11-12 to other chromosomal sites are called orphons. The 18 VK orphons sequenced up to now carry defects and are to be considered pseudogenes. We now describe the VKI gene segment V108 whose sequence is without any defects and which was localized to the long arm of chromosome 2 at 2q12-14 by in situ hybridization. The V108 region may have been transposed from the short to the long arm of chromosome 2 by a pericentric inversion. Possible reasons for the conservation of its sequence are discussed. In spite of its bona fide sequence V108 is considered to be an unlikely candidate for a VK-JK rearrangement and subsequent functional expression.

MeSH Terms
Amino Acid Sequence Animals Base Sequence Chromosome Banding Chromosome Mapping Chromosomes, Human, Pair 2 Cloning, Molecular Cosmids Gene Rearrangement Genes, Immunoglobulin Humans Hybrid Cells Immunoglobulin Variable Region/genetics Immunoglobulin kappa-Chains/genetics Molecular Sequence Data Pseudogenes Restriction Mapping
Chemicals
Immunoglobulin Variable Region Immunoglobulin kappa-Chains
Authors & Affiliations
6 authors, click to expand affiliations / ORCID
Huber C
Institut für Physiologische Chemie, Physikalische Biochemie und Zellbiologie der Universität München, FRG.
Thiebe R
Hameister H
Smola H
Lötscher E
Zachau H G
References (23)
23 references, click to expand
  1. New Giemsa method for the differential staining of sister chromatids.
    Nature. 1974 Sep 13;251(5471):156-8 PMID: 4138930
  2. Evolution of a group of transposed human V kappa genes.
    Biol Chem Hoppe Seyler. 1990 Mar;371(3):283-90 PMID: 2111145
  3. Orphons: dispersed genetic elements derived from tandem repetitive genes of eucaryotes.
    Cell. 1981 Mar;23(3):651-63 PMID: 6784929
  4. Organization and expression of eucaryotic split genes coding for proteins.
    Annu Rev Biochem. 1981;50:349-83 PMID: 6791577
  5. Chromosomal location of human kappa and lambda immunoglobulin light chain constant region genes.
    J Exp Med. 1982 May 1;155(5):1480-90 PMID: 6802926
  6. Localization of human immunoglobulin kappa light chain variable region genes to the short arm of chromosome 2 by in situ hybridization.
    Proc Natl Acad Sci U S A. 1982 Aug;79(16):4957-61 PMID: 6812058
  7. Construction of improved M13 vectors using oligodeoxynucleotide-directed mutagenesis.
    Gene. 1983 Dec;26(1):101-6 PMID: 6323249
  8. Correct transcription of an immunoglobulin kappa gene requires an upstream fragment containing conserved sequence elements.
    Nature. 1984 Jul 5-11;310(5972):71-4 PMID: 6330567
  9. Organization and evolution of a gene cluster for human immunoglobulin variable regions of the kappa type.
    J Mol Biol. 1984 Jun 25;176(2):189-204 PMID: 6086934
  10. Molecular footprints of human immunoglobulin gene evolution: a new sequence family.
    Nucleic Acids Res. 1984 Jul 11;12(13):5265-75 PMID: 6087280
  11. Experiences with unexpected structural chromosome aberrations in prenatal diagnosis in a Danish series.
    Prenat Diagn. 1984 May-Jun;4(3):181-6 PMID: 6463025
  12. The significance of pericentric inversions of chromosome 2.
    Hum Genet. 1986 Jan;72(1):32-6 PMID: 3943862
  13. Dispersed human immunoglobulin kappa light-chain genes.
    Nature. 1986 Apr 3-9;320(6061):456-8 PMID: 3083265
  14. The mechanism of chromosome 14 inversion in a human T cell lymphoma.
    Cell. 1987 Jul 3;50(1):97-105 PMID: 3036367
  15. The human V kappa locus. Characterization of extended immunoglobulin gene regions by cosmid cloning.
    J Mol Biol. 1987 Jan 20;193(2):241-53 PMID: 3037085
  16. The human VK locus. Characterization of a duplicated region encoding 28 different immunoglobulin genes.
    J Mol Biol. 1988 Jan 5;199(1):23-34 PMID: 3351922
  17. The Z family, a group of transposed human immunoglobulin V kappa genes.
    Gene. 1988 Sep 30;69(2):209-14 PMID: 2853098
  18. Localization, analysis and evolution of transposed human immunoglobulin V kappa genes.
    Gene. 1988 Sep 30;69(2):215-23 PMID: 2853099
  19. Transposed human immunoglobulin V kappa gene regions carry clusters of conserved sequence elements.
    Gene. 1988 Sep 30;69(2):225-36 PMID: 2853100
  20. Localization of the active type I DNA topoisomerase gene on human chromosome 20q11.2-13.1, and two pseudogenes on chromosomes 1q23-24 and 22q11.2-13.1.
    Hum Genet. 1989 Dec;84(1):6-10 PMID: 2558068
  21. The V-J-intergenic region of the human kappa locus.
    Biol Chem Hoppe Seyler. 1989 Sep;370(9):1007-12 PMID: 2575392
  22. The human immunoglobulin kappa locus and some of its acrobatics. A review presented on the occasion of receiving the "Otto-Warburg-Medaille" of Gesellschaft für Biologische Chemie at Osnabrück on September 13, 1989.
    Biol Chem Hoppe Seyler. 1990 Jan;371(1):1-6 PMID: 2108705
  23. Cloning in single-stranded bacteriophage as an aid to rapid DNA sequencing.
    J Mol Biol. 1980 Oct 25;143(2):161-78 PMID: 6260957
Article Info
Journal
Nucleic acids research
Abbr.
Nucleic Acids Res
ISSN
0305-1048
Published
1990-06-25
Pages
3475-8
Language
English
Region
England
NLM ID
0411011
PMCID
PMC330999
Subset
IM
Databases
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