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PMID: 21036866 Published · ppublish English Journal Article Research Support, N.I.H., Extramural

ZFIN: enhancements and updates to the Zebrafish Model Organism Database.

Nucleic acids research ·Vol. 39 ·No. Database issue ·2011-01-00 ·Pages D822-9

Bradford Y, Conlin T, Dunn N, Fashena D, Frazer K, Howe DG, Knight J, Mani P, Martin R, Moxon SA, Paddock H, Pich C, Ramachandran S, Ruef BJ, Ruzicka L, Bauer Schaper H, Schaper K, Shao X, Singer A, Sprague J, Sprunger B, Van Slyke C, Westerfield M

Abstract

ZFIN, the Zebrafish Model Organism Database, http://zfin.org, serves as the central repository and web-based resource for zebrafish genetic, genomic, phenotypic and developmental data. ZFIN manually curates comprehensive data for zebrafish genes, phenotypes, genotypes, gene expression, antibodies, anatomical structures and publications. A wide-ranging collection of web-based search forms and tools facilitates access to integrated views of these data promoting analysis and scientific discovery. Data represented in ZFIN are derived from three primary sources: curation of zebrafish publications, individual research laboratories and collaborations with bioinformatics organizations. Data formats include text, images and graphical representations. ZFIN is a dynamic resource with data added daily as part of our ongoing curation process. Software updates are frequent. Here, we describe recent additions to ZFIN including (i) enhanced access to images, (ii) genomic features, (iii) genome browser, (iv) transcripts, (v) antibodies and (vi) a community wiki for protocols and antibodies.

MeSH Terms
Animals Antibodies Databases, Genetic Gene Expression Genomics Models, Animal Phenotype RNA, Messenger/chemistry,metabolism Zebrafish/genetics,immunology,metabolism
Chemicals
Antibodies RNA, Messenger
Authors & Affiliations
23 authors, click to expand affiliations / ORCID
Bradford Yvonne
ZFIN, 5291 University of Oregon, Eugene, OR 97403-5291, USA. ybradford@zfin.org
Conlin Tom
Dunn Nathan
Fashena David
Frazer Ken
Howe Douglas G
Knight Jonathan
Mani Prita
Martin Ryan
Moxon Sierra A T
Paddock Holly
Pich Christian
Ramachandran Sridhar
Ruef Barbara J
Ruzicka Leyla
Bauer Schaper Holle
Schaper Kevin
Shao Xiang
Singer Amy
Sprague Judy
Sprunger Brock
Van Slyke Ceri
Westerfield Monte
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8 references, click to expand
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Article Info
Journal
Nucleic acids research
Abbr.
Nucleic Acids Res
ISSN
1362-4962
Published
2011-01-00
Epub
2010-00-29
Pages
D822-9
Language
English
Region
England
NLM ID
0411011
PMCID
PMC3013679
Subset
IM
Grants
NHGRI NIH HHS · HG002659 · United States
NHGRI NIH HHS · P41 HG002659 · United States
NHGRI NIH HHS · R01 HG004834 · United States
NHGRI NIH HHS · R01HG004838 · United States
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