Home LiteratureArticle Details
PMID: 20865121 Published · epublish English Journal Article Research Support, Non-U.S. Gov't

Mutation in the gene encoding ubiquitin ligase LRSAM1 in patients with Charcot-Marie-Tooth disease.

PLoS genetics ·Vol. 6 ·No. 8 ·2010-08-26

Guernsey DL, Jiang H, Bedard K, Evans SC, Ferguson M, Matsuoka M, Macgillivray C, Nightingale M, Perry S, Rideout AL, Orr A, Ludman M, Skidmore DL, Benstead T, Samuels ME

Abstract

Charcot-Marie-Tooth disease (CMT) represents a family of related sensorimotor neuropathies. We studied a large family from a rural eastern Canadian community, with multiple individuals suffering from a condition clinically most similar to autosomal recessive axonal CMT, or AR-CMT2. Homozygosity mapping with high-density SNP genotyping of six affected individuals from the family excluded 23 known genes for various subtypes of CMT and instead identified a single homozygous region on chromosome 9, at 122,423,730-129,841,977 Mbp, shared identical by state in all six affected individuals. A homozygous pathogenic variant was identified in the gene encoding leucine rich repeat and sterile alpha motif 1 (LRSAM1) by direct DNA sequencing of genes within the region in affected DNA samples. The single nucleotide change mutates an intronic consensus acceptor splicing site from AG to AA. Direct analysis of RNA from patient blood demonstrated aberrant splicing of the affected exon, causing an obligatory frameshift and premature truncation of the protein. Western blotting of immortalized cells from a homozygous patient showed complete absence of detectable protein, consistent with the splice site defect. LRSAM1 plays a role in membrane vesicle fusion during viral maturation and for proper adhesion of neuronal cells in culture. Other ubiquitin ligases play documented roles in neurodegenerative diseases. LRSAM1 is a strong candidate for the causal gene for the genetic disorder in our kindred.

MeSH Terms
Base Sequence Canada Charcot-Marie-Tooth Disease/enzymology,genetics Female Humans Male Molecular Sequence Data Mutagenesis, Insertional Mutation Pedigree Polymorphism, Single Nucleotide RNA Splice Sites RNA Splicing Ubiquitin-Protein Ligases/genetics,metabolism
Chemicals
RNA Splice Sites LRSAM1 protein, human Ubiquitin-Protein Ligases
Authors & Affiliations
15 authors, click to expand affiliations / ORCID
Guernsey Duane L
Department of Pathology, Dalhousie University, Halifax, Nova Scotia, Canada.
Jiang Haiyan
Bedard Karen
Evans Susan C
Ferguson Meghan
Matsuoka Makoto
Macgillivray Christine
Nightingale Mathew
Perry Scott
Rideout Andrea L
Orr Andrew
Ludman Mark
Skidmore David L
Benstead Timothy
Samuels Mark E
Conflict of Interest

The authors have declared that no competing interests exist.

References (32)
32 references, click to expand
  1. Genetic diagnosis by whole exome capture and massively parallel DNA sequencing.
    Proc Natl Acad Sci U S A. 2009 Nov 10;106(45):19096-101 PMID: 19861545
  2. Diagnosis and new treatments in genetic neuropathies.
    J Neurol Neurosurg Psychiatry. 2009 Dec;80(12):1304-14 PMID: 19917815
  3. Sorting out the inherited neuropathies.
    Pract Neurol. 2007 Apr;7(2):93-105 PMID: 17430873
  4. SIMPLE mutations in Charcot-Marie-Tooth disease and the potential role of its protein product in protein degradation.
    Hum Mutat. 2005 Apr;25(4):372-83 PMID: 15776429
  5. Clinical and electrophysiological aspects of Charcot-Marie-Tooth disease.
    Neuromolecular Med. 2006;8(1-2):3-22 PMID: 16775364
  6. SIMPLE interacts with NEDD4 and TSG101: evidence for a role in lysosomal sorting and implications for Charcot-Marie-Tooth disease.
    J Neurosci Res. 2005 Oct 1;82(1):43-50 PMID: 16118794
  7. Genetic variation in an individual human exome.
    PLoS Genet. 2008 Aug 15;4(8):e1000160 PMID: 18704161
  8. Autosomal-recessive forms of demyelinating Charcot-Marie-Tooth disease.
    Neuromolecular Med. 2006;8(1-2):75-86 PMID: 16775368
  9. Mutation of a putative protein degradation gene LITAF/SIMPLE in Charcot-Marie-Tooth disease 1C.
    Neurology. 2003 Jan 14;60(1):22-6 PMID: 12525712
  10. The complete genome of an individual by massively parallel DNA sequencing.
    Nature. 2008 Apr 17;452(7189):872-6 PMID: 18421352
  11. Homozygosity haplotype allows a genomewide search for the autosomal segments shared among patients.
    Am J Hum Genet. 2007 Jun;80(6):1090-102 PMID: 17503327
  12. Molecular genetics of autosomal-recessive axonal Charcot-Marie-Tooth neuropathies.
    Neuromolecular Med. 2006;8(1-2):87-106 PMID: 16775369
  13. Genome-wide in situ exon capture for selective resequencing.
    Nat Genet. 2007 Dec;39(12):1522-7 PMID: 17982454
  14. Targeted capture and massively parallel sequencing of 12 human exomes.
    Nature. 2009 Sep 10;461(7261):272-6 PMID: 19684571
  15. Molecular diagnostics of Charcot-Marie-Tooth disease and related peripheral neuropathies.
    Neuromolecular Med. 2006;8(1-2):243-54 PMID: 16775379
  16. Mutations in TRPV4 cause Charcot-Marie-Tooth disease type 2C.
    Nat Genet. 2010 Feb;42(2):170-4 PMID: 20037586
  17. Pathomechanisms of mutant proteins in Charcot-Marie-Tooth disease.
    Neuromolecular Med. 2006;8(1-2):217-42 PMID: 16775378
  18. Autosomal-recessive and X-linked forms of hereditary motor and sensory neuropathy in childhood.
    Muscle Nerve. 2007 Aug;36(2):131-43 PMID: 17410579
  19. Charcot-Marie-Tooth disease: a clinico-genetic confrontation.
    Ann Hum Genet. 2008 May;72(Pt 3):416-41 PMID: 18215208
  20. Diagnosis of Charcot-Marie-Tooth disease.
    J Biomed Biotechnol. 2009;2009:985415 PMID: 19826499
  21. Whole-genome sequencing in a patient with Charcot-Marie-Tooth neuropathy.
    N Engl J Med. 2010 Apr 1;362(13):1181-91 PMID: 20220177
  22. Hereditary predominantly motor neuropathies.
    Curr Opin Neurol. 2009 Oct;22(5):451-9 PMID: 19680125
  23. Application of homozygosity haplotype analysis to genetic mapping with high-density SNP genotype data.
    PLoS One. 2009;4(4):e5280 PMID: 19399176
  24. Molecular genetics of autosomal-dominant axonal Charcot-Marie-Tooth disease.
    Neuromolecular Med. 2006;8(1-2):63-74 PMID: 16775367
  25. Tal, a Tsg101-specific E3 ubiquitin ligase, regulates receptor endocytosis and retrovirus budding.
    Genes Dev. 2004 Jul 15;18(14):1737-52 PMID: 15256501
  26. Neuropathology of Charcot-Marie-Tooth and related disorders.
    Neuromolecular Med. 2006;8(1-2):23-42 PMID: 16775365
  27. Hereditary neuropathies.
    Curr Opin Neurol. 2007 Oct;20(5):542-7 PMID: 17885442
  28. Charcot-Marie-tooth disease.
    Foot Ankle Spec. 2008 Dec;1(6):350-4 PMID: 19825739
  29. Charcot-Marie-Tooth neuropathies: diagnosis and management.
    Semin Neurol. 2008 Apr;28(2):185-94 PMID: 18351520
  30. Molecular genetics of hereditary sensory neuropathies.
    Neuromolecular Med. 2006;8(1-2):147-58 PMID: 16775373
  31. Charcot-Marie-Tooth disorders with an autosomal recessive mode of inheritance.
    Clin Neuropathol. 2008 Jan-Feb;27(1):1-12 PMID: 18257469
  32. Exome sequencing identifies the cause of a mendelian disorder.
    Nat Genet. 2010 Jan;42(1):30-5 PMID: 19915526
Article Info
Journal
PLoS genetics
Abbr.
PLoS Genet
ISSN
1553-7404
Published
2010-08-26
Epub
2010-00-26
Language
English
Region
United States
NLM ID
101239074
PMCID
PMC2928813
Subset
IM
Analysis Services
Analysis Services

Contact

No. 2 Wenbo Road, Zhangqiu District, Jinan, Shandong

Qilu Normal University · Genelibs Bioinformatics Lab

750 Shunhua Rd, Jinan

2F, Bldg F, University Science Park

Tel: 0531-88819269

WeChat Official Account

Follow our WeChat subscription account for real-time updates and the latest in medical and biological research.


Business Email

E-mail: product@genelibs.com