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PMID: 20827291 Published · ppublish English Journal Article Research Support, N.I.H., Extramural Research Support, Non-U.S. Gov't

UniFrac: an effective distance metric for microbial community comparison.

The ISME journal ·Vol. 5 ·No. 2 ·2011-02-00 ·Pages 169-72

Lozupone C, Lladser ME, Knights D, Stombaugh J, Knight R

Abstract

暂无摘要

MeSH Terms
Animals Bacteria/classification,genetics Data Interpretation, Statistical Ecology/methods Ecosystem Humans Phylogeny Software/standards
Authors & Affiliations
5 authors, click to expand affiliations / ORCID
Lozupone Catherine
Department of Chemistry and Biochemistry, University of Colorado, Boulder, CO, USA.
Lladser Manuel E
Knights Dan
Stombaugh Jesse
Knight Rob
References (11)
11 references, click to expand
  1. Direct sequencing of the human microbiome readily reveals community differences.
    Genome Biol. 2010;11(5):210 PMID: 20441597
  2. Evolution of mammals and their gut microbes.
    Science. 2008 Jun 20;320(5883):1647-51 PMID: 18497261
  3. Introducing mothur: open-source, platform-independent, community-supported software for describing and comparing microbial communities.
    Appl Environ Microbiol. 2009 Dec;75(23):7537-41 PMID: 19801464
  4. Evaluating different approaches that test whether microbial communities have the same structure.
    ISME J. 2008 Mar;2(3):265-75 PMID: 18239608
  5. Fast UniFrac: facilitating high-throughput phylogenetic analyses of microbial communities including analysis of pyrosequencing and PhyloChip data.
    ISME J. 2010 Jan;4(1):17-27 PMID: 19710709
  6. Soil microbial community responses to multiple experimental climate change drivers.
    Appl Environ Microbiol. 2010 Feb;76(4):999-1007 PMID: 20023089
  7. UniFrac: a new phylogenetic method for comparing microbial communities.
    Appl Environ Microbiol. 2005 Dec;71(12):8228-35 PMID: 16332807
  8. A core gut microbiome in obese and lean twins.
    Nature. 2009 Jan 22;457(7228):480-4 PMID: 19043404
  9. Phylogenetic characterization of fecal microbial communities of dogs fed diets with or without supplemental dietary fiber using 454 pyrosequencing.
    PLoS One. 2010 Mar 22;5(3):e9768 PMID: 20339542
  10. Quantitative and qualitative beta diversity measures lead to different insights into factors that structure microbial communities.
    Appl Environ Microbiol. 2007 Mar;73(5):1576-85 PMID: 17220268
  11. QIIME allows analysis of high-throughput community sequencing data.
    Nat Methods. 2010 May;7(5):335-6 PMID: 20383131
Article Info
Journal
The ISME journal
Abbr.
ISME J
ISSN
1751-7370
Published
2011-02-00
Epub
2010-00-09
Pages
169-72
Language
English
Region
England
NLM ID
101301086
PMCID
PMC3105689
Subset
IM
Grants
NLM NIH HHS · T15 LM009451 · United States
NLM NIH HHS · 5T15 LM009451-03 · United States
Howard Hughes Medical Institute · United States
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