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PMID: 20729860 Published · ppublish English Journal Article Research Support, N.I.H., Extramural Research Support, U.S. Gov't, Non-P.H.S.

Structural basis for selective activation of ABA receptors.

Nature structural & molecular biology ·Vol. 17 ·No. 9 ·2010-09-00 ·Pages 1109-13

Peterson FC, Burgie ES, Park SY, Jensen DR, Weiner JJ, Bingman CA, Chang CE, Cutler SR, Phillips GN, Volkman BF

Abstract

Changing environmental conditions and lessening fresh water supplies have sparked intense interest in understanding and manipulating abscisic acid (ABA) signaling, which controls adaptive responses to drought and other abiotic stressors. We recently discovered a selective ABA agonist, pyrabactin, and used it to discover its primary target PYR1, the founding member of the PYR/PYL family of soluble ABA receptors. To understand pyrabactin's selectivity, we have taken a combined structural, chemical and genetic approach. We show that subtle differences between receptor binding pockets control ligand orientation between productive and nonproductive modes. Nonproductive binding occurs without gate closure and prevents receptor activation. Observations in solution show that these orientations are in rapid equilibrium that can be shifted by mutations to control maximal agonist activity. Our results provide a robust framework for the design of new agonists and reveal a new mechanism for agonist selectivity.

MeSH Terms
Arabidopsis/chemistry,metabolism Arabidopsis Proteins/chemistry,genetics,metabolism Membrane Transport Proteins/chemistry,genetics,metabolism Models, Molecular Mutation Naphthalenes/chemistry Nuclear Magnetic Resonance, Biomolecular Protein Binding Protein Structure, Tertiary Sulfonamides/chemistry
Chemicals
Arabidopsis Proteins Membrane Transport Proteins Naphthalenes Pyr1 protein, Arabidopsis Sulfonamides pyrabactin
Authors & Affiliations
10 authors, click to expand affiliations / ORCID
Peterson Francis C
Department of Biochemistry and Center for Eukaryotic Structural Genomics, Medical College of Wisconsin, Milwaukee, Wisconsin, USA.
Burgie E Sethe
Park Sang-Youl
Jensen Davin R
Weiner Joshua J
Bingman Craig A
Chang Chia-En A
Cutler Sean R
Phillips George N
Volkman Brian F
References (22)
22 references, click to expand
  1. Abscisic acid: emergence of a core signaling network.
    Annu Rev Plant Biol. 2010;61:651-79 PMID: 20192755
  2. Two-state allosteric behavior in a single-domain signaling protein.
    Science. 2001 Mar 23;291(5512):2429-33 PMID: 11264542
  3. Reverse two-hybrid and one-hybrid systems to detect dissociation of protein-protein and DNA-protein interactions.
    Proc Natl Acad Sci U S A. 1996 Sep 17;93(19):10315-20 PMID: 8816797
  4. MolProbity: all-atom contacts and structure validation for proteins and nucleic acids.
    Nucleic Acids Res. 2007 Jul;35(Web Server issue):W375-83 PMID: 17452350
  5. electronic Ligand Builder and Optimization Workbench (eLBOW): a tool for ligand coordinate and restraint generation.
    Acta Crystallogr D Biol Crystallogr. 2009 Oct;65(Pt 10):1074-80 PMID: 19770504
  6. Processing of X-ray diffraction data collected in oscillation mode.
    Methods Enzymol. 1997;276:307-26 PMID: 27754618
  7. Structural basis of abscisic acid signalling.
    Nature. 2009 Dec 3;462(7273):609-14 PMID: 19855379
  8. Small-scale, semi-automated purification of eukaryotic proteins for structure determination.
    J Struct Funct Genomics. 2007 Dec;8(4):153-66 PMID: 17985212
  9. Molecular tailoring of farnesylation for plant drought tolerance and yield protection.
    Plant J. 2005 Aug;43(3):413-24 PMID: 16045476
  10. Adaptations of the helix-grip fold for ligand binding and catalysis in the START domain superfamily.
    Proteins. 2001 May 1;43(2):134-44 PMID: 11276083
  11. Coot: model-building tools for molecular graphics.
    Acta Crystallogr D Biol Crystallogr. 2004 Dec;60(Pt 12 Pt 1):2126-32 PMID: 15572765
  12. Likelihood-enhanced fast rotation functions.
    Acta Crystallogr D Biol Crystallogr. 2004 Mar;60(Pt 3):432-8 PMID: 14993666
  13. The abscisic acid receptor PYR1 in complex with abscisic acid.
    Nature. 2009 Dec 3;462(7273):665-8 PMID: 19898494
  14. Abscisic acid biosynthesis and catabolism.
    Annu Rev Plant Biol. 2005;56:165-85 PMID: 15862093
  15. Closely related receptor complexes differ in their ABA selectivity and sensitivity.
    Plant J. 2010 Jan;61(1):25-35 PMID: 19769575
  16. Likelihood-enhanced fast translation functions.
    Acta Crystallogr D Biol Crystallogr. 2005 Apr;61(Pt 4):458-64 PMID: 15805601
  17. Abscisic acid inhibits type 2C protein phosphatases via the PYR/PYL family of START proteins.
    Science. 2009 May 22;324(5930):1068-71 PMID: 19407142
  18. Optimal description of a protein structure in terms of multiple groups undergoing TLS motion.
    Acta Crystallogr D Biol Crystallogr. 2006 Apr;62(Pt 4):439-50 PMID: 16552146
  19. A gate-latch-lock mechanism for hormone signalling by abscisic acid receptors.
    Nature. 2009 Dec 3;462(7273):602-8 PMID: 19898420
  20. Structural mechanism of abscisic acid binding and signaling by dimeric PYR1.
    Science. 2009 Dec 4;326(5958):1373-9 PMID: 19933100
  21. Structural insights into the mechanism of abscisic acid signaling by PYL proteins.
    Nat Struct Mol Biol. 2009 Dec;16(12):1230-6 PMID: 19893533
  22. Regulators of PP2C phosphatase activity function as abscisic acid sensors.
    Science. 2009 May 22;324(5930):1064-8 PMID: 19407143
Article Info
Journal
Nature structural & molecular biology
Abbr.
Nat Struct Mol Biol
ISSN
1545-9985
Published
2010-09-00
Epub
2010-00-22
Pages
1109-13
Language
English
Region
United States
NLM ID
101186374
PMCID
PMC2933299
Subset
IM
Grants
NIGMS NIH HHS · U54 GM074901 · United States
NIGMS NIH HHS · U54 GM074901-01 · United States
Databases
PDB
Corrections
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