Home LiteratureArticle Details
PMID: 20439775 Published · ppublish English Journal Article Research Support, N.I.H., Extramural

Autophosphorylation within the Atg1 activation loop is required for both kinase activity and the induction of autophagy in Saccharomyces cerevisiae.

Genetics ·Vol. 185 ·No. 3 ·2010-07-00 ·Pages 871-82

Yeh YY, Wrasman K, Herman PK

Abstract

Autophagy is an evolutionarily conserved degradative pathway that has been implicated in a number of physiological events important for human health. This process was originally identified as a response to nutrient deprivation and is thought to serve in a recycling capacity during periods of nutritional stress. Autophagy activity appears to be highly regulated and multiple signaling pathways are known to target a complex of proteins that contains the Atg1 protein kinase. The data here extend these observations and identify a particular phosphorylation event on Atg1 as a potential control point within the autophagy pathway in Saccharomyces cerevisiae. This phosphorylation occurs at a threonine residue, T226, within the Atg1 activation loop that is conserved in all Atg1 orthologs. Replacing this threonine with a nonphosphorylatable residue resulted in a loss of Atg1 protein kinase activity and a failure to induce autophagy. This phosphorylation required the presence of a functional Atg1 kinase domain and two known regulators of Atg1 activity, Atg13 and Atg17. Interestingly, the levels of this modification were found to increase dramatically upon exposure to conditions that induce autophagy. In addition, T226 phosphorylation was associated with an autophosphorylated form of Atg1 that was found specifically in cells undergoing the autophagy process. In all, these data suggest that autophosphorylation within the Atg1 activation loop may represent a point of regulatory control for this degradative process.

MeSH Terms
Adaptor Proteins, Signal Transducing/genetics,metabolism Amino Acid Sequence Autophagy Autophagy-Related Proteins Blotting, Western Carrier Proteins/genetics,metabolism Immunoprecipitation Molecular Sequence Data Mutation/genetics Phosphorylation Protein Kinases/genetics,metabolism Saccharomyces cerevisiae/genetics,growth & development,metabolism Saccharomyces cerevisiae Proteins/genetics,metabolism Sequence Homology, Amino Acid Signal Transduction
Chemicals
ATG13 protein, S cerevisiae Adaptor Proteins, Signal Transducing Atg17 protein, S cerevisiae Autophagy-Related Proteins Carrier Proteins Saccharomyces cerevisiae Proteins Protein Kinases ATG1 protein, S cerevisiae
Authors & Affiliations
3 authors, click to expand affiliations / ORCID
Yeh Yuh-Ying
Department of Molecular Genetics, The Ohio State University, Columbus Ohio 43210, USA.
Wrasman Kristie
Herman Paul K
References (56)
56 references, click to expand
  1. Organization of the pre-autophagosomal structure responsible for autophagosome formation.
    Mol Biol Cell. 2008 May;19(5):2039-50 PMID: 18287526
  2. Tor-mediated induction of autophagy via an Apg1 protein kinase complex.
    J Cell Biol. 2000 Sep 18;150(6):1507-13 PMID: 10995454
  3. An Atg1/Atg13 complex with multiple roles in TOR-mediated autophagy regulation.
    Mol Biol Cell. 2009 Apr;20(7):2004-14 PMID: 19225150
  4. ATG genes involved in non-selective autophagy are conserved from yeast to man, but the selective Cvt and pexophagy pathways also require organism-specific genes.
    Autophagy. 2007 Mar-Apr;3(2):106-16 PMID: 17204848
  5. Novel system for monitoring autophagy in the yeast Saccharomyces cerevisiae.
    Biochem Biophys Res Commun. 1995 May 5;210(1):126-32 PMID: 7741731
  6. Eating oneself and uninvited guests: autophagy-related pathways in cellular defense.
    Cell. 2005 Jan 28;120(2):159-62 PMID: 15680321
  7. Affinity labeling of cAMP-dependent protein kinase with p-fluorosulfonylbenzoyl adenosine. Covalent modification of lysine 71.
    J Biol Chem. 1981 Nov 10;256(21):10837-42 PMID: 6270132
  8. Molecular machinery of autophagosome formation in yeast, Saccharomyces cerevisiae.
    FEBS Lett. 2007 May 22;581(11):2156-61 PMID: 17382324
  9. ULK-Atg13-FIP200 complexes mediate mTOR signaling to the autophagy machinery.
    Mol Biol Cell. 2009 Apr;20(7):1992-2003 PMID: 19225151
  10. The regulation of autophagy in eukaryotic cells: do all roads pass through Atg1?
    Autophagy. 2006 Apr-Jun;2(2):146-8 PMID: 16874100
  11. Tor directly controls the Atg1 kinase complex to regulate autophagy.
    Mol Cell Biol. 2010 Feb;30(4):1049-58 PMID: 19995911
  12. Protein kinases 6. The eukaryotic protein kinase superfamily: kinase (catalytic) domain structure and classification.
    FASEB J. 1995 May;9(8):576-96 PMID: 7768349
  13. Apg1p, a novel protein kinase required for the autophagic process in Saccharomyces cerevisiae.
    Gene. 1997 Jun 19;192(2):245-50 PMID: 9224897
  14. Regulation mechanisms and signaling pathways of autophagy.
    Annu Rev Genet. 2009;43:67-93 PMID: 19653858
  15. Isolation and characterization of autophagy-defective mutants of Saccharomyces cerevisiae.
    FEBS Lett. 1993 Oct 25;333(1-2):169-74 PMID: 8224160
  16. ULK1.ATG13.FIP200 complex mediates mTOR signaling and is essential for autophagy.
    J Biol Chem. 2009 May 1;284(18):12297-305 PMID: 19258318
  17. The protein kinase family: conserved features and deduced phylogeny of the catalytic domains.
    Science. 1988 Jul 1;241(4861):42-52 PMID: 3291115
  18. Autophagy in the pathogenesis of disease.
    Cell. 2008 Jan 11;132(1):27-42 PMID: 18191218
  19. Membrane protein sorting: biosynthesis, transport and processing of yeast vacuolar alkaline phosphatase.
    EMBO J. 1989 Aug;8(8):2241-50 PMID: 2676517
  20. Cargo proteins facilitate the formation of transport vesicles in the cytoplasm to vacuole targeting pathway.
    J Biol Chem. 2004 Jul 16;279(29):29889-94 PMID: 15138258
  21. The rye mutants identify a role for Ssn/Srb proteins of the RNA polymerase II holoenzyme during stationary phase entry in Saccharomyces cerevisiae.
    Genetics. 2001 Jan;157(1):17-26 PMID: 11139488
  22. An evolutionary proteomics approach identifies substrates of the cAMP-dependent protein kinase.
    Proc Natl Acad Sci U S A. 2005 Sep 27;102(39):13933-8 PMID: 16172400
  23. A dimeric kinase assembly underlying autophosphorylation in the p21 activated kinases.
    J Mol Biol. 2006 Aug 11;361(2):312-26 PMID: 16837009
  24. Cytoplasm-to-vacuole targeting and autophagy employ the same machinery to deliver proteins to the yeast vacuole.
    Proc Natl Acad Sci U S A. 1996 Oct 29;93(22):12304-8 PMID: 8901576
  25. Tor, a phosphatidylinositol kinase homologue, controls autophagy in yeast.
    J Biol Chem. 1998 Feb 13;273(7):3963-6 PMID: 9461583
  26. Distal recognition sites in substrates are required for efficient phosphorylation by the cAMP-dependent protein kinase.
    Genetics. 2009 Jun;182(2):529-39 PMID: 19364808
  27. Membrane recruitment of Aut7p in the autophagy and cytoplasm to vacuole targeting pathways requires Aut1p, Aut2p, and the autophagy conjugation complex.
    J Cell Biol. 2001 Jan 8;152(1):51-64 PMID: 11149920
  28. Regulatory mechanisms and functions of MAP kinase signaling pathways.
    IUBMB Life. 2006 May-Jun;58(5-6):312-7 PMID: 16754324
  29. Crystal structure of the catalytic subunit of cyclic adenosine monophosphate-dependent protein kinase.
    Science. 1991 Jul 26;253(5018):407-14 PMID: 1862342
  30. Activation-loop autophosphorylation is mediated by a novel transitional intermediate form of DYRKs.
    Cell. 2005 Jun 17;121(6):925-36 PMID: 15960979
  31. Molecular machinery required for autophagy and the cytoplasm to vacuole targeting (Cvt) pathway in S. cerevisiae.
    Curr Opin Cell Biol. 2002 Aug;14(4):468-75 PMID: 12383798
  32. The Tor and PKA signaling pathways independently target the Atg1/Atg13 protein kinase complex to control autophagy.
    Proc Natl Acad Sci U S A. 2009 Oct 6;106(40):17049-54 PMID: 19805182
  33. The Atg1 kinase complex is involved in the regulation of protein recruitment to initiate sequestering vesicle formation for nonspecific autophagy in Saccharomyces cerevisiae.
    Mol Biol Cell. 2008 Feb;19(2):668-81 PMID: 18077553
  34. The Ras/cAMP-dependent protein kinase signaling pathway regulates an early step of the autophagy process in Saccharomyces cerevisiae.
    J Biol Chem. 2004 May 14;279(20):20663-71 PMID: 15016820
  35. Antagonistic controls of autophagy and glycogen accumulation by Snf1p, the yeast homolog of AMP-activated protein kinase, and the cyclin-dependent kinase Pho85p.
    Mol Cell Biol. 2001 Sep;21(17):5742-52 PMID: 11486014
  36. A novel, human Atg13 binding protein, Atg101, interacts with ULK1 and is essential for macroautophagy.
    Autophagy. 2009 Jul;5(5):649-62 PMID: 19287211
  37. Kinetic and catalytic mechanisms of protein kinases.
    Chem Rev. 2001 Aug;101(8):2271-90 PMID: 11749373
  38. Functional profiling of the Saccharomyces cerevisiae genome.
    Nature. 2002 Jul 25;418(6896):387-91 PMID: 12140549
  39. The conformational plasticity of protein kinases.
    Cell. 2002 May 3;109(3):275-82 PMID: 12015977
  40. Control by phosphorylation.
    Curr Opin Struct Biol. 1996 Dec;6(6):762-9 PMID: 8994876
  41. The quantitative Pho8Delta60 assay of nonspecific autophagy.
    Methods Enzymol. 2008;451:33-42 PMID: 19185711
  42. FIP200, a ULK-interacting protein, is required for autophagosome formation in mammalian cells.
    J Cell Biol. 2008 May 5;181(3):497-510 PMID: 18443221
  43. Regulation of protein kinases; controlling activity through activation segment conformation.
    Mol Cell. 2004 Sep 10;15(5):661-75 PMID: 15350212
  44. Using substrate-binding variants of the cAMP-dependent protein kinase to identify novel targets and a kinase domain important for substrate interactions in Saccharomyces cerevisiae.
    Genetics. 2006 Aug;173(4):1909-17 PMID: 16751660
  45. Autophagosome formation: core machinery and adaptations.
    Nat Cell Biol. 2007 Oct;9(10):1102-9 PMID: 17909521
  46. Atg17 functions in cooperation with Atg1 and Atg13 in yeast autophagy.
    Mol Biol Cell. 2005 May;16(5):2544-53 PMID: 15743910
  47. Potential therapeutic applications of autophagy.
    Nat Rev Drug Discov. 2007 Apr;6(4):304-12 PMID: 17396135
  48. Kinase-inactivated ULK proteins inhibit autophagy via their conserved C-terminal domains using an Atg13-independent mechanism.
    Mol Cell Biol. 2009 Jan;29(1):157-71 PMID: 18936157
  49. Active and inactive protein kinases: structural basis for regulation.
    Cell. 1996 Apr 19;85(2):149-58 PMID: 8612268
  50. The pre-autophagosomal structure organized by concerted functions of APG genes is essential for autophagosome formation.
    EMBO J. 2001 Nov 1;20(21):5971-81 PMID: 11689437
  51. A chaperone-dependent GSK3beta transitional intermediate mediates activation-loop autophosphorylation.
    Mol Cell. 2006 Nov 17;24(4):627-33 PMID: 17188038
  52. Activation segment exchange: a common mechanism of kinase autophosphorylation?
    Trends Biochem Sci. 2007 Aug;32(8):351-6 PMID: 17627826
  53. Analyses of APG13 gene involved in autophagy in yeast, Saccharomyces cerevisiae.
    Gene. 1997 Jun 19;192(2):207-13 PMID: 9224892
  54. Nutrient-dependent mTORC1 association with the ULK1-Atg13-FIP200 complex required for autophagy.
    Mol Biol Cell. 2009 Apr;20(7):1981-91 PMID: 19211835
  55. Aminopeptidase I of Saccharomyces cerevisiae is localized to the vacuole independent of the secretory pathway.
    J Cell Biol. 1992 Oct;119(2):287-99 PMID: 1400574
  56. Chemical genetic analysis of Apg1 reveals a non-kinase role in the induction of autophagy.
    Mol Biol Cell. 2003 Feb;14(2):477-90 PMID: 12589048
Article Info
Journal
Genetics
Abbr.
Genetics
ISSN
1943-2631
Published
2010-07-00
Epub
2010-00-03
Pages
871-82
Language
English
Region
United States
NLM ID
0374636
PMCID
PMC2907206
Subset
IM
Grants
NIGMS NIH HHS · R01 GM065227 · United States
NIGMS NIH HHS · GM65227 · United States
Analysis Services
Analysis Services

Contact

No. 2 Wenbo Road, Zhangqiu District, Jinan, Shandong

Qilu Normal University · Genelibs Bioinformatics Lab

750 Shunhua Rd, Jinan

2F, Bldg F, University Science Park

Tel: 0531-88819269

WeChat Official Account

Follow our WeChat subscription account for real-time updates and the latest in medical and biological research.


Business Email

E-mail: product@genelibs.com