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PMID: 20367276 Published · ppublish English Journal Article Research Support, N.I.H., Extramural Research Support, Non-U.S. Gov't Review

Mechanisms of oxidative protein folding in the bacterial cell envelope.

Antioxidants & redox signaling ·Vol. 13 ·No. 8 ·2010-10-00 ·Pages 1231-46

Kadokura H, Beckwith J

Abstract

Disulfide-bond formation is important for the correct folding of a great number of proteins that are exported to the cell envelope of bacteria. Bacterial cells have evolved elaborate systems to promote the joining of two cysteines to form a disulfide bond and to repair misoxidized proteins. In the past two decades, significant advances have occurred in our understanding of the enzyme systems (DsbA, DsbB, DsbC, DsbG, and DsbD) used by the gram-negative bacterium Escherichia coli to ensure that correct pairs of cysteines are joined during the process of protein folding. However, a number of fundamental questions about these processes remain, especially about how they occur inside the cell. In addition, recent recognition of the increasing diversity among bacteria in the disulfide bond-forming capacity and in the systems for introducing disulfide bonds into proteins is raising new questions. We review here the marked progress in this field and discuss important questions that remain for future studies.

MeSH Terms
Cell Membrane/metabolism Disulfides/metabolism Escherichia coli/cytology,metabolism Escherichia coli Proteins/chemistry,metabolism Oxidation-Reduction Protein Folding
Chemicals
Disulfides Escherichia coli Proteins
Authors & Affiliations
2 authors, click to expand affiliations / ORCID
Kadokura Hiroshi
Graduate School of Biological Sciences, Nara Institute of Science and Technology, Takayama, Ikoma, Nara, Japan. hkadokura@bs.naist.jp
Beckwith Jon
References (112)
112 references, click to expand
  1. Structural and functional characterization of DsbC, a protein involved in disulfide bond formation in Escherichia coli.
    Biochemistry. 1995 Apr 18;34(15):5075-89 PMID: 7536035
  2. Identification and characterization of an Escherichia coli gene required for the formation of correctly folded alkaline phosphatase, a periplasmic enzyme.
    EMBO J. 1992 Jan;11(1):57-62 PMID: 1740115
  3. Conserved role of the linker alpha-helix of the bacterial disulfide isomerase DsbC in the avoidance of misoxidation by DsbB.
    J Biol Chem. 2006 Feb 24;281(8):4911-9 PMID: 16280324
  4. Thioredoxin--a fold for all reasons.
    Structure. 1995 Mar 15;3(3):245-50 PMID: 7788290
  5. Properties of the thioredoxin fold superfamily are modulated by a single amino acid residue.
    J Biol Chem. 2009 Apr 10;284(15):10150-9 PMID: 19181668
  6. The genomics of disulfide bonding and protein stabilization in thermophiles.
    PLoS Biol. 2005 Sep;3(9):e309 PMID: 16111437
  7. Engineered DsbC chimeras catalyze both protein oxidation and disulfide-bond isomerization in Escherichia coli: Reconciling two competing pathways.
    Proc Natl Acad Sci U S A. 2004 Jul 6;101(27):10018-23 PMID: 15220477
  8. The reactive and destabilizing disulfide bond of DsbA, a protein required for protein disulfide bond formation in vivo.
    Biochemistry. 1993 May 18;32(19):5083-92 PMID: 8494885
  9. Structure and function of the oxidoreductase DsbA1 from Neisseria meningitidis.
    J Mol Biol. 2009 Dec 18;394(5):931-43 PMID: 19815019
  10. DsbL and DsbI form a specific dithiol oxidase system for periplasmic arylsulfate sulfotransferase in uropathogenic Escherichia coli.
    J Mol Biol. 2008 Jul 18;380(4):667-80 PMID: 18565543
  11. Biochemical and structural study of the homologues of the thiol-disulfide oxidoreductase DsbA in Neisseria meningitidis.
    J Mol Biol. 2009 Oct 2;392(4):952-66 PMID: 19631659
  12. Identification of a protein required for disulfide bond formation in vivo.
    Cell. 1991 Nov 1;67(3):581-9 PMID: 1934062
  13. Turning a disulfide isomerase into an oxidase: DsbC mutants that imitate DsbA.
    EMBO J. 2001 Apr 2;20(7):1555-62 PMID: 11285220
  14. UCSF Chimera--a visualization system for exploratory research and analysis.
    J Comput Chem. 2004 Oct;25(13):1605-12 PMID: 15264254
  15. Efficient folding of proteins with multiple disulfide bonds in the Escherichia coli cytoplasm.
    Proc Natl Acad Sci U S A. 1999 Nov 23;96(24):13703-8 PMID: 10570136
  16. Identification of an atypical membrane protein involved in the formation of protein disulfide bonds in oxygenic photosynthetic organisms.
    J Biol Chem. 2008 Jun 6;283(23):15762-70 PMID: 18413314
  17. A new Escherichia coli gene, dsbG, encodes a periplasmic protein involved in disulphide bond formation, required for recycling DsbA/DsbB and DsbC redox proteins.
    Mol Microbiol. 1997 Oct;26(1):121-32 PMID: 9383195
  18. Role of dimerization in the catalytic properties of the Escherichia coli disulfide isomerase DsbC.
    J Biol Chem. 2009 Sep 4;284(36):23972-9 PMID: 19581640
  19. The disulfide bond isomerase DsbC is activated by an immunoglobulin-fold thiol oxidoreductase: crystal structure of the DsbC-DsbDalpha complex.
    EMBO J. 2002 Sep 16;21(18):4774-84 PMID: 12234918
  20. Protein disulfide bond formation in prokaryotes.
    Annu Rev Biochem. 2003;72:111-35 PMID: 12524212
  21. Preparation and structure of the charge-transfer intermediate of the transmembrane redox catalyst DsbB.
    FEBS Lett. 2008 Oct 15;582(23-24):3301-7 PMID: 18775700
  22. The oxidase DsbA folds a protein with a nonconsecutive disulfide.
    J Biol Chem. 2007 Oct 26;282(43):31302-7 PMID: 17702751
  23. Reduction of the periplasmic disulfide bond isomerase, DsbC, occurs by passage of electrons from cytoplasmic thioredoxin.
    J Bacteriol. 1997 Nov;179(21):6602-8 PMID: 9352906
  24. Disulfide bond formation by exported glutaredoxin indicates glutathione's presence in the E. coli periplasm.
    Proc Natl Acad Sci U S A. 2009 Feb 3;106(5):1572-7 PMID: 19164554
  25. Retardation of folding as a possible means of suppression of a mutation in the leader sequence of an exported protein.
    J Biol Chem. 1988 Oct 15;263(29):14790-3 PMID: 3049590
  26. The nonconsecutive disulfide bond of Escherichia coli phytase (AppA) renders it dependent on the protein-disulfide isomerase, DsbC.
    J Biol Chem. 2005 Mar 25;280(12):11387-94 PMID: 15642731
  27. DsbB elicits a red-shift of bound ubiquinone during the catalysis of DsbA oxidation.
    J Biol Chem. 2004 Feb 20;279(8):6761-8 PMID: 14634016
  28. Two cysteines in each periplasmic domain of the membrane protein DsbB are required for its function in protein disulfide bond formation.
    EMBO J. 1994 Nov 1;13(21):5121-7 PMID: 7957076
  29. The multiple functions of the thiol-based electron flow pathways of Escherichia coli: Eternal concepts revisited.
    Biochim Biophys Acta. 2008 Nov;1780(11):1170-200 PMID: 18423382
  30. Thiol-disulphide oxidoreductase modules in the low-GC Gram-positive bacteria.
    Mol Microbiol. 2007 May;64(4):984-99 PMID: 17501922
  31. DsbB catalyzes disulfide bond formation de novo.
    J Biol Chem. 2002 Sep 6;277(36):32706-13 PMID: 12072444
  32. Mutations that allow disulfide bond formation in the cytoplasm of Escherichia coli.
    Science. 1993 Dec 10;262(5140):1744-7 PMID: 8259521
  33. Quality control in the bacterial periplasm.
    Biochim Biophys Acta. 2004 Nov 11;1694(1-3):121-34 PMID: 15546662
  34. A single dipeptide sequence modulates the redox properties of a whole enzyme family.
    Fold Des. 1998;3(3):161-71 PMID: 9562546
  35. De novo design and evolution of artificial disulfide isomerase enzymes analogous to the bacterial DsbC.
    J Biol Chem. 2008 Nov 14;283(46):31469-76 PMID: 18782764
  36. Protein translocation is mediated by oligomers of the SecY complex with one SecY copy forming the channel.
    Cell. 2007 Apr 6;129(1):97-110 PMID: 17418789
  37. Crystal structures of the DsbG disulfide isomerase reveal an unstable disulfide.
    Proc Natl Acad Sci U S A. 2004 Jun 15;101(24):8876-81 PMID: 15184683
  38. Crystal structure of the DsbA protein required for disulphide bond formation in vivo.
    Nature. 1993 Sep 30;365(6445):464-8 PMID: 8413591
  39. Reactivity and ionization of the active site cysteine residues of DsbA, a protein required for disulfide bond formation in vivo.
    Biochemistry. 1994 May 17;33(19):5974-83 PMID: 8180227
  40. Structural basis and kinetics of inter- and intramolecular disulfide exchange in the redox catalyst DsbD.
    EMBO J. 2004 Apr 21;23(8):1709-19 PMID: 15057279
  41. Copper stress causes an in vivo requirement for the Escherichia coli disulfide isomerase DsbC.
    J Biol Chem. 2005 Oct 7;280(40):33785-91 PMID: 16087673
  42. Evidence for proton shuffling in a thioredoxin-like protein during catalysis.
    J Mol Biol. 2008 Oct 17;382(4):978-86 PMID: 18692066
  43. The complete general secretory pathway in gram-negative bacteria.
    Microbiol Rev. 1993 Mar;57(1):50-108 PMID: 8096622
  44. Redox states of DsbA in the periplasm of Escherichia coli.
    FEBS Lett. 1995 May 1;364(1):55-8 PMID: 7750543
  45. Dsb-insensitive expression of CcrA, a metallo-beta-lactamase from Bacteroides fragilis, in Escherichia coli after amino acid substitution at two cysteine residues within CcrA.
    J Bacteriol. 1996 Jul;178(14):4306-9 PMID: 8763963
  46. Preferential binding of an unfolded protein to DsbA.
    EMBO J. 1996 Jan 15;15(2):392-98 PMID: 8617214
  47. Redox-active cysteines of a membrane electron transporter DsbD show dual compartment accessibility.
    EMBO J. 2007 Aug 8;26(15):3509-20 PMID: 17641688
  48. Substrate binding and catalysis by glutathione reductase as derived from refined enzyme: substrate crystal structures at 2 A resolution.
    J Mol Biol. 1989 Nov 5;210(1):163-80 PMID: 2585516
  49. Critical role of a thiolate-quinone charge transfer complex and its adduct form in de novo disulfide bond generation by DsbB.
    Proc Natl Acad Sci U S A. 2006 Jan 10;103(2):287-92 PMID: 16384917
  50. Why is DsbA such an oxidizing disulfide catalyst?
    Cell. 1995 Dec 15;83(6):947-55 PMID: 8521518
  51. Oxidative protein folding is driven by the electron transport system.
    Cell. 1999 Jul 23;98(2):217-27 PMID: 10428033
  52. Bacterial protein disulfide isomerase: efficient catalysis of oxidative protein folding at acidic pH.
    Biochemistry. 1993 Nov 16;32(45):12251-6 PMID: 8218303
  53. Probing the chemistry of thioredoxin catalysis with force.
    Nature. 2007 Nov 1;450(7166):124-7 PMID: 17972886
  54. NMR solution structure of the integral membrane enzyme DsbB: functional insights into DsbB-catalyzed disulfide bond formation.
    Mol Cell. 2008 Sep 26;31(6):896-908 PMID: 18922471
  55. In vivo oxidative protein folding can be facilitated by oxidation-reduction cycling.
    Mol Microbiol. 2010 Jan;75(1):13-28 PMID: 19968787
  56. Theoretical insights into the mechanism for thiol/disulfide exchange.
    Chemistry. 2004 Jan 5;10(1):257-66 PMID: 14695571
  57. Conservation and diversity of the cellular disulfide bond formation pathways.
    Antioxid Redox Signal. 2006 May-Jun;8(5-6):797-811 PMID: 16771671
  58. Disulfide-dependent folding and export of Escherichia coli DsbC.
    J Biol Chem. 2001 Jan 12;276(2):1146-51 PMID: 11042167
  59. The disulphide isomerase DsbC cooperates with the oxidase DsbA in a DsbD-independent manner.
    Mol Microbiol. 2008 Jan;67(2):336-49 PMID: 18036138
  60. Catalytic mechanism of DsbA and its comparison with that of protein disulfide isomerase.
    Biochemistry. 1995 Mar 21;34(11):3576-87 PMID: 7893654
  61. Characterization of DsbC, a periplasmic protein of Erwinia chrysanthemi and Escherichia coli with disulfide isomerase activity.
    EMBO J. 1994 Apr 15;13(8):2007-12 PMID: 8168497
  62. Description of the topographical changes associated to the different stages of the DsbA catalytic cycle.
    Protein Sci. 2002 Jul;11(7):1600-12 PMID: 12070313
  63. Identification of the gene for vitamin K epoxide reductase.
    Nature. 2004 Feb 5;427(6974):541-4 PMID: 14765195
  64. Different exported proteins in E. coli show differences in the temporal mode of processing in vivo.
    Cell. 1981 Jul;25(1):151-7 PMID: 7023693
  65. On the role of the cis-proline residue in the active site of DsbA.
    Protein Sci. 1999 Jan;8(1):96-105 PMID: 10210188
  66. Two snapshots of electron transport across the membrane: insights into the structure and function of DsbD.
    J Biol Chem. 2009 Apr 24;284(17):11416-24 PMID: 19258316
  67. Kinetic characterization of the disulfide bond-forming enzyme DsbB.
    J Biol Chem. 2007 Apr 6;282(14):10263-71 PMID: 17267399
  68. An atlas of the thioredoxin fold class reveals the complexity of function-enabling adaptations.
    PLoS Comput Biol. 2009 Oct;5(10):e1000541 PMID: 19851441
  69. Staphylococcus aureus DsbA does not have a destabilizing disulfide. A new paradigm for bacterial oxidative folding.
    J Biol Chem. 2008 Feb 15;283(7):4261-71 PMID: 18077463
  70. Identification and characterization of a new disulfide isomerase-like protein (DsbD) in Escherichia coli.
    EMBO J. 1995 Jul 17;14(14):3415-24 PMID: 7628442
  71. The uncharged surface features surrounding the active site of Escherichia coli DsbA are conserved and are implicated in peptide binding.
    Protein Sci. 1997 Jun;6(6):1148-56 PMID: 9194175
  72. Mutations in VKORC1 cause warfarin resistance and multiple coagulation factor deficiency type 2.
    Nature. 2004 Feb 5;427(6974):537-41 PMID: 14765194
  73. Snapshots of DsbA in action: detection of proteins in the process of oxidative folding.
    Science. 2004 Jan 23;303(5657):534-7 PMID: 14739460
  74. Crystal structure of the DsbB-DsbA complex reveals a mechanism of disulfide bond generation.
    Cell. 2006 Nov 17;127(4):789-801 PMID: 17110337
  75. On the functional interchangeability, oxidant versus reductant, of members of the thioredoxin superfamily.
    J Bacteriol. 2000 Feb;182(3):723-7 PMID: 10633106
  76. Dynamic nature of disulphide bond formation catalysts revealed by crystal structures of DsbB.
    EMBO J. 2009 Mar 18;28(6):779-91 PMID: 19214188
  77. Respiratory chain strongly oxidizes the CXXC motif of DsbB in the Escherichia coli disulfide bond formation pathway.
    EMBO J. 1999 Mar 1;18(5):1192-8 PMID: 10064586
  78. A selection for mutants that interfere with folding of Escherichia coli thioredoxin-1 in vivo.
    Proc Natl Acad Sci U S A. 2005 Dec 27;102(52):18872-7 PMID: 16357193
  79. DsbG, a protein disulfide isomerase with chaperone activity.
    J Biol Chem. 2000 May 5;275(18):13349-52 PMID: 10788443
  80. Roles of a conserved arginine residue of DsbB in linking protein disulfide-bond-formation pathway to the respiratory chain of Escherichia coli.
    Proc Natl Acad Sci U S A. 2000 Sep 26;97(20):10884-9 PMID: 11005861
  81. Genomic evidence that the intracellular proteins of archaeal microbes contain disulfide bonds.
    Proc Natl Acad Sci U S A. 2002 Jul 23;99(15):9679-84 PMID: 12107280
  82. A periplasmic reducing system protects single cysteine residues from oxidation.
    Science. 2009 Nov 20;326(5956):1109-11 PMID: 19965429
  83. Reactivities of quinone-free DsbB from Escherichia coli.
    J Biol Chem. 2005 Sep 23;280(38):33035-44 PMID: 16027117
  84. Protein thiol modifications visualized in vivo.
    PLoS Biol. 2004 Nov;2(11):e333 PMID: 15502869
  85. Dimerization by domain hybridization bestows chaperone and isomerase activities.
    J Biol Chem. 2003 Oct 31;278(44):43292-8 PMID: 12933788
  86. An in vivo pathway for disulfide bond isomerization in Escherichia coli.
    Proc Natl Acad Sci U S A. 1996 Nov 12;93(23):13048-53 PMID: 8917542
  87. The reductive enzyme thioredoxin 1 acts as an oxidant when it is exported to the Escherichia coli periplasm.
    Proc Natl Acad Sci U S A. 1998 Sep 1;95(18):10751-6 PMID: 9724776
  88. Reconstitution of a disulfide isomerization system.
    J Biol Chem. 2002 Jul 26;277(30):26886-92 PMID: 12004064
  89. Laboratory evolution of one disulfide isomerase to resemble another.
    Proc Natl Acad Sci U S A. 2007 Jul 10;104(28):11670-5 PMID: 17609373
  90. Bacterial species exhibit diversity in their mechanisms and capacity for protein disulfide bond formation.
    Proc Natl Acad Sci U S A. 2008 Aug 19;105(33):11933-8 PMID: 18695247
  91. The CXXC motif is more than a redox rheostat.
    J Biol Chem. 2007 Sep 28;282(39):28823-28833 PMID: 17675287
  92. Inhibition of bacterial disulfide bond formation by the anticoagulant warfarin.
    Proc Natl Acad Sci U S A. 2010 Jan 5;107(1):297-301 PMID: 20018758
  93. The ribosome as a platform for co-translational processing, folding and targeting of newly synthesized proteins.
    Nat Struct Mol Biol. 2009 Jun;16(6):589-97 PMID: 19491936
  94. In vitro and in vivo redox states of the Escherichia coli periplasmic oxidoreductases DsbA and DsbC.
    Biochemistry. 1997 Aug 19;36(33):10067-72 PMID: 9254601
  95. The structure of the bacterial oxidoreductase enzyme DsbA in complex with a peptide reveals a basis for substrate specificity in the catalytic cycle of DsbA enzymes.
    J Biol Chem. 2009 Jun 26;284(26):17835-45 PMID: 19389711
  96. A pathway for disulfide bond formation in vivo.
    Proc Natl Acad Sci U S A. 1993 Feb 1;90(3):1038-42 PMID: 8430071
  97. Redox potentials of glutaredoxins and other thiol-disulfide oxidoreductases of the thioredoxin superfamily determined by direct protein-protein redox equilibria.
    J Biol Chem. 1997 Dec 5;272(49):30780-6 PMID: 9388218
  98. Roles of cysteine residues of DsbB in its activity to reoxidize DsbA, the protein disulphide bond catalyst of Escherichia coli.
    Genes Cells. 1996 Feb;1(2):201-8 PMID: 9140064
  99. In vivo and in vitro function of the Escherichia coli periplasmic cysteine oxidoreductase DsbG.
    J Biol Chem. 1999 Mar 19;274(12):7784-92 PMID: 10075670
  100. Four cysteines of the membrane protein DsbB act in concert to oxidize its substrate DsbA.
    EMBO J. 2002 May 15;21(10):2354-63 PMID: 12006488
  101. Detecting folding intermediates of a protein as it passes through the bacterial translocation channel.
    Cell. 2009 Sep 18;138(6):1164-73 PMID: 19766568
  102. Transmembrane electron transfer by the membrane protein DsbD occurs via a disulfide bond cascade.
    Cell. 2000 Nov 22;103(5):769-79 PMID: 11114333
  103. Respiratory chain is required to maintain oxidized states of the DsbA-DsbB disulfide bond formation system in aerobically growing Escherichia coli cells.
    Proc Natl Acad Sci U S A. 1997 Oct 28;94(22):11857-62 PMID: 9342327
  104. Diversity of chemical mechanisms in thioredoxin catalysis revealed by single-molecule force spectroscopy.
    Nat Struct Mol Biol. 2009 Aug;16(8):890-6 PMID: 19597482
  105. Identification of the L,D-transpeptidases responsible for attachment of the Braun lipoprotein to Escherichia coli peptidoglycan.
    J Bacteriol. 2007 May;189(10):3927-31 PMID: 17369299
  106. In vivo substrate specificity of periplasmic disulfide oxidoreductases.
    J Biol Chem. 2004 Mar 26;279(13):12967-73 PMID: 14726535
  107. Crystal structure of the protein disulfide bond isomerase, DsbC, from Escherichia coli.
    Nat Struct Biol. 2000 Mar;7(3):196-9 PMID: 10700276
  108. An engineered pathway for the formation of protein disulfide bonds.
    Science. 2004 Feb 20;303(5661):1185-9 PMID: 14976313
  109. Crystal structures of reduced and oxidized DsbA: investigation of domain motion and thiolate stabilization.
    Structure. 1998 Jun 15;6(6):757-67 PMID: 9655827
  110. Complementation of DsbA deficiency with secreted thioredoxin variants reveals the crucial role of an efficient dithiol oxidant for catalyzed protein folding in the bacterial periplasm.
    EMBO J. 1999 Jun 15;18(12):3271-81 PMID: 10369668
  111. Thermodynamic aspects of DsbD-mediated electron transport.
    J Mol Biol. 2008 Jul 25;380(5):783-8 PMID: 18571669
  112. Maturation of Pseudomonas aeruginosa elastase. Formation of the disulfide bonds.
    J Biol Chem. 2001 Jul 13;276(28):26030-5 PMID: 11350952
Article Info
Journal
Antioxidants & redox signaling
Abbr.
Antioxid Redox Signal
ISSN
1557-7716
Published
2010-10-00
Pages
1231-46
Language
English
Region
United States
NLM ID
100888899
PMCID
PMC2959184
Subset
IM
Grants
NIGMS NIH HHS · R01 GM041883 · United States
NIGMS NIH HHS · GM41883 · United States
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