Home LiteratureArticle Details
PMID: 20347421 Published · ppublish English Journal Article Research Support, N.I.H., Extramural

Priming and extending: a UbcH5/Cdc34 E2 handoff mechanism for polyubiquitination on a SCF substrate.

Molecular cell ·Vol. 37 ·No. 6 ·2010-03-26 ·Pages 784-96

Wu K, Kovacev J, Pan ZQ

Abstract

We describe a mechanistic model of polyubiquitination by the SCF(beta TrCP2) E3 ubiquitin (Ub) ligase using human I kappaB alpha as a substrate. Biochemical reconstitution experiments revealed that the polyubiquitination of I kappaB alpha began with the action of the UbcH5 E2 Ub-conjugating enzyme, transferring a single Ub to I kappaB alpha K21/K22 rapidly and efficiently. Subsequently, the Cdc34 E2 functioned in the formation of polyubiquitin chains. It was determined that a Ub fused at I kappaB alpha K21 acts as a receptor, directing Cdc34 for rapid and efficient K48-linked Ub chain synthesis that depends on SCF(beta TrCP2) and the substrate's N terminus. The I kappaB alpha-linked fusion Ub appears to mediate direct contacts with Cdc34 and the SCF's RING subcomplex. Taken together, these results suggest a role for the multifaceted interactions between the I kappaB alpha K21/K22-linked receptor Ub, the SCF's RING complex, and Cdc34 approximately S approximately Ub in establishing the optimal orientation of the receptor Ub to drive conjugation.

MeSH Terms
Anaphase-Promoting Complex-Cyclosome Biocatalysis Cell Line, Tumor Humans I-kappa B Kinase/genetics,metabolism RNA, Small Interfering/genetics SKP Cullin F-Box Protein Ligases/metabolism Substrate Specificity Ubiquitin-Conjugating Enzymes/genetics,metabolism Ubiquitin-Protein Ligase Complexes/genetics,metabolism Ubiquitination
Chemicals
RNA, Small Interfering CDC34 protein, human UBE2D1 protein, human UBE2D2 protein, human UBE2D3 protein, human Ubiquitin-Conjugating Enzymes Ubiquitin-Protein Ligase Complexes Anaphase-Promoting Complex-Cyclosome SKP Cullin F-Box Protein Ligases I-kappa B Kinase
Authors & Affiliations
3 authors, click to expand affiliations / ORCID
Wu Kenneth
Department of Oncological Sciences, The Mount Sinai School of Medicine, One Gustave L. Levy Place, New York, NY 10029-6574, USA.
Kovacev Jordan
Pan Zhen-Qiang
References (29)
29 references, click to expand
  1. E2-BRCA1 RING interactions dictate synthesis of mono- or specific polyubiquitin chain linkages.
    Nat Struct Mol Biol. 2007 Oct;14(10):941-8 PMID: 17873885
  2. The human ubiquitin-conjugating enzyme Cdc34 controls cellular proliferation through regulation of p27Kip1 protein levels.
    Exp Cell Res. 2005 Feb 15;303(2):482-93 PMID: 15652359
  3. A multiubiquitin chain is confined to specific lysine in a targeted short-lived protein.
    Science. 1989 Mar 24;243(4898):1576-83 PMID: 2538923
  4. Mechanisms underlying ubiquitination.
    Annu Rev Biochem. 2001;70:503-33 PMID: 11395416
  5. Site-specific phosphorylation of IkappaBalpha by a novel ubiquitination-dependent protein kinase activity.
    Cell. 1996 Mar 22;84(6):853-62 PMID: 8601309
  6. ROC1, a homolog of APC11, represents a family of cullin partners with an associated ubiquitin ligase activity.
    Mol Cell. 1999 Apr;3(4):535-41 PMID: 10230407
  7. Structure of the Cul1-Rbx1-Skp1-F boxSkp2 SCF ubiquitin ligase complex.
    Nature. 2002 Apr 18;416(6882):703-9 PMID: 11961546
  8. Insights into E3 ligase activity revealed by a SUMO-RanGAP1-Ubc9-Nup358 complex.
    Nature. 2005 Jun 2;435(7042):687-92 PMID: 15931224
  9. The ubiquitin system.
    Annu Rev Biochem. 1998;67:425-79 PMID: 9759494
  10. A complex of Cdc4p, Skp1p, and Cdc53p/cullin catalyzes ubiquitination of the phosphorylated CDK inhibitor Sic1p.
    Cell. 1997 Oct 17;91(2):221-30 PMID: 9346239
  11. Identification of the ubiquitin carrier proteins, E2s, involved in signal-induced conjugation and subsequent degradation of IkappaBalpha.
    J Biol Chem. 1999 May 21;274(21):14823-30 PMID: 10329681
  12. F-box proteins are receptors that recruit phosphorylated substrates to the SCF ubiquitin-ligase complex.
    Cell. 1997 Oct 17;91(2):209-19 PMID: 9346238
  13. Regulation of the RSP5 ubiquitin ligase by an intrinsic ubiquitin-binding site.
    J Biol Chem. 2009 May 1;284(18):12071-9 PMID: 19252184
  14. Autoinhibitory regulation of SCF-mediated ubiquitination by human cullin 1's C-terminal tail.
    Proc Natl Acad Sci U S A. 2008 Aug 26;105(34):12230-5 PMID: 18723677
  15. Mechanism of ubiquitin-chain formation by the human anaphase-promoting complex.
    Cell. 2008 May 16;133(4):653-65 PMID: 18485873
  16. Human SHPRH is a ubiquitin ligase for Mms2-Ubc13-dependent polyubiquitylation of proliferating cell nuclear antigen.
    Proc Natl Acad Sci U S A. 2006 Nov 28;103(48):18107-12 PMID: 17108083
  17. Multimodal activation of the ubiquitin ligase SCF by Nedd8 conjugation.
    Mol Cell. 2008 Oct 10;32(1):21-31 PMID: 18851830
  18. Sequential E2s drive polyubiquitin chain assembly on APC targets.
    Cell. 2007 Jul 13;130(1):127-39 PMID: 17632060
  19. The Rab5 guanine nucleotide exchange factor Rabex-5 binds ubiquitin (Ub) and functions as a Ub ligase through an atypical Ub-interacting motif and a zinc finger domain.
    J Biol Chem. 2006 Mar 10;281(10):6874-83 PMID: 16407276
  20. Recruitment of a ROC1-CUL1 ubiquitin ligase by Skp1 and HOS to catalyze the ubiquitination of I kappa B alpha.
    Mol Cell. 1999 Apr;3(4):527-33 PMID: 10230406
  21. Nedd8 on cullin: building an expressway to protein destruction.
    Oncogene. 2004 Mar 15;23(11):1985-97 PMID: 15021886
  22. Structure of a beta-TrCP1-Skp1-beta-catenin complex: destruction motif binding and lysine specificity of the SCF(beta-TrCP1) ubiquitin ligase.
    Mol Cell. 2003 Jun;11(6):1445-56 PMID: 12820959
  23. Signal-induced degradation of I kappa B alpha requires site-specific ubiquitination.
    Proc Natl Acad Sci U S A. 1995 Nov 21;92(24):11259-63 PMID: 7479976
  24. Phosphorylation meets ubiquitination: the control of NF-[kappa]B activity.
    Annu Rev Immunol. 2000;18:621-63 PMID: 10837071
  25. The SCF(HOS/beta-TRCP)-ROC1 E3 ubiquitin ligase utilizes two distinct domains within CUL1 for substrate targeting and ubiquitin ligation.
    Mol Cell Biol. 2000 Feb;20(4):1382-93 PMID: 10648623
  26. Cloning of the human homolog of the CDC34 cell cycle gene by complementation in yeast.
    Proc Natl Acad Sci U S A. 1993 Nov 15;90(22):10484-8 PMID: 8248134
  27. Mechanism of lysine 48-linked ubiquitin-chain synthesis by the cullin-RING ubiquitin-ligase complex SCF-Cdc34.
    Cell. 2005 Dec 16;123(6):1107-20 PMID: 16360039
  28. Structural insights into NEDD8 activation of cullin-RING ligases: conformational control of conjugation.
    Cell. 2008 Sep 19;134(6):995-1006 PMID: 18805092
  29. The Nedd8-conjugated ROC1-CUL1 core ubiquitin ligase utilizes Nedd8 charged surface residues for efficient polyubiquitin chain assembly catalyzed by Cdc34.
    J Biol Chem. 2002 Jan 4;277(1):516-27 PMID: 11675391
Article Info
Journal
Molecular cell
Abbr.
Mol Cell
ISSN
1097-4164
Published
2010-03-26
Pages
784-96
Language
English
Region
United States
NLM ID
9802571
PMCID
PMC2862584
Subset
IM
Grants
NIGMS NIH HHS · R01 GM061051 · United States
NCI NIH HHS · R01 CA095634-07 · United States
NIGMS NIH HHS · R01 GM061051-07 · United States
NIGMS NIH HHS · GM61051 · United States
NCI NIH HHS · R01 CA095634 · United States
NCI NIH HHS · CA095634 · United States
Analysis Services
Analysis Services

Contact

No. 2 Wenbo Road, Zhangqiu District, Jinan, Shandong

Qilu Normal University · Genelibs Bioinformatics Lab

750 Shunhua Rd, Jinan

2F, Bldg F, University Science Park

Tel: 0531-88819269

WeChat Official Account

Follow our WeChat subscription account for real-time updates and the latest in medical and biological research.


Business Email

E-mail: product@genelibs.com