Home LiteratureArticle Details
PMID: 20195578 Published · ppublish English Journal Article Research Support, N.I.H., Extramural Review

Hydrogen exchange mass spectrometry: what is it and what can it tell us?

Analytical and bioanalytical chemistry ·Vol. 397 ·No. 3 ·2010-06-00 ·Pages 967-72

Marcsisin SR, Engen JR

Abstract

Proteins are undoubtedly some of the most essential molecules of life. While much is known about many proteins, some aspects still remain mysterious. One particularly important aspect of understanding proteins is determining how structure helps dictate function. Continued development and implementation of biophysical techniques that provide information about protein conformation and dynamics is essential. In this review, we discuss hydrogen exchange mass spectrometry and how this method can be used to learn about protein conformation and dynamics. The basic concepts of the method are described, the workflow illustrated, and a few examples of its application are provided.

MeSH Terms
Animals Humans Hydrogen/chemistry Mass Spectrometry/methods,trends Protein Conformation Proteins/chemistry,metabolism
Chemicals
Proteins Hydrogen
Authors & Affiliations
2 authors, click to expand affiliations / ORCID
Marcsisin Sean R
The Department of Chemistry & Chemical Biology and The Barnett Institute of Chemical & Biological Analysis, Northeastern University, Boston, MA 02115, USA.
Engen John R
References (30)
30 references, click to expand
  1. "TOF2H": a precision toolbox for rapid, high density/high coverage hydrogen-deuterium exchange mass spectrometry via an LC-MALDI approach, covering the data pipeline from spectral acquisition to HDX rate analysis.
    BMC Bioinformatics. 2008 Sep 20;9:387 PMID: 18803853
  2. Protein hydrogen exchange measured at single-residue resolution by electron transfer dissociation mass spectrometry.
    Anal Chem. 2009 Jul 15;81(14):5577-84 PMID: 19601649
  3. High-speed and high-resolution UPLC separation at zero degrees Celsius.
    Anal Chem. 2008 Sep 1;80(17):6815-20 PMID: 18672890
  4. Analysis of protein conformation and dynamics by hydrogen/deuterium exchange MS.
    Anal Chem. 2009 Oct 1;81(19):7870-5 PMID: 19788312
  5. Conformational changes in proteins probed by hydrogen-exchange electrospray-ionization mass spectrometry.
    Rapid Commun Mass Spectrom. 1991 Apr;5(4):214-7 PMID: 1666528
  6. Hydra: software for tailored processing of H/D exchange data from MS or tandem MS analyses.
    BMC Bioinformatics. 2009 May 27;10:162 PMID: 19473537
  7. Detection of transient protein folding populations by mass spectrometry.
    Science. 1993 Nov 5;262(5135):896-900 PMID: 8235611
  8. Use of different proteases working in acidic conditions to improve sequence coverage and resolution in hydrogen/deuterium exchange of large proteins.
    Rapid Commun Mass Spectrom. 2003;17(21):2387-93 PMID: 14587084
  9. Characterization of IgG1 Conformation and Conformational Dynamics by Hydrogen/Deuterium Exchange Mass Spectrometry.
    Anal Chem. 2009 Jul 15;81(14):5966 PMID: 19606834
  10. Determination of amide hydrogen exchange by mass spectrometry: a new tool for protein structure elucidation.
    Protein Sci. 1993 Apr;2(4):522-31 PMID: 8390883
  11. Hydrogen exchange and structural dynamics of proteins and nucleic acids.
    Q Rev Biophys. 1983 Nov;16(4):521-655 PMID: 6204354
  12. Abl N-terminal cap stabilization of SH3 domain dynamics.
    Biochemistry. 2008 May 27;47(21):5795-803 PMID: 18452309
  13. Probing the non-covalent structure of proteins by amide hydrogen exchange and mass spectrometry.
    J Mass Spectrom. 1997 Feb;32(2):135-46 PMID: 9102198
  14. Detecting structural changes in viral capsids by hydrogen exchange and mass spectrometry.
    Protein Sci. 2001 Jun;10(6):1234-43 PMID: 11369862
  15. HDX-ESI-MS reveals enhanced conformational dynamics of the amyloidogenic protein beta(2)-microglobulin upon release from the MHC-1.
    J Am Soc Mass Spectrom. 2009 Feb;20(2):278-86 PMID: 18996721
  16. Coupling of folding and binding for unstructured proteins.
    Curr Opin Struct Biol. 2002 Feb;12(1):54-60 PMID: 11839490
  17. HIV-1 Nef selectively activates Src family kinases Hck, Lyn, and c-Src through direct SH3 domain interaction.
    J Biol Chem. 2006 Sep 15;281(37):27029-38 PMID: 16849330
  18. Key interactions in HIV-1 maturation identified by hydrogen-deuterium exchange.
    Nat Struct Mol Biol. 2004 Jul;11(7):676-7 PMID: 15208693
  19. Hydrogen exchange mass spectrometry for the analysis of protein dynamics.
    Mass Spectrom Rev. 2006 Jan-Feb;25(1):158-70 PMID: 16208684
  20. Primary structure effects on peptide group hydrogen exchange.
    Proteins. 1993 Sep;17(1):75-86 PMID: 8234246
  21. Investigating solution-phase protein structure and dynamics by hydrogen exchange mass spectrometry.
    Curr Protoc Protein Sci. 2009 Nov;Chapter 17:Unit 17.6.1-17 PMID: 19937720
  22. HD desktop: an integrated platform for the analysis and visualization of H/D exchange data.
    J Am Soc Mass Spectrom. 2009 Apr;20(4):601-10 PMID: 19135386
  23. Protein conformations, interactions, and H/D exchange.
    Methods Enzymol. 2005;402:312-60 PMID: 16401514
  24. Partial unfolding of diverse SH3 domains on a wide timescale.
    J Mol Biol. 2006 Apr 14;357(5):1592-604 PMID: 16487539
  25. Allosteric loss-of-function mutations in HIV-1 Nef from a long-term non-progressor.
    J Mol Biol. 2007 Nov 16;374(1):121-9 PMID: 17920628
  26. Investigating the higher order structure of proteins. Hydrogen exchange, proteolytic fragmentation, and mass spectrometry.
    Methods Mol Biol. 2000;146:95-112 PMID: 10948498
  27. Hydrogen exchange: the modern legacy of Linderstrøm-Lang.
    Protein Sci. 1997 May;6(5):1101-9 PMID: 9144782
  28. The cell as a collection of protein machines: preparing the next generation of molecular biologists.
    Cell. 1998 Feb 6;92(3):291-4 PMID: 9476889
  29. Identification of an allosterically sensitive unfolding unit in hemoglobin.
    J Mol Biol. 1983 Sep 5;169(1):325-44 PMID: 6312054
  30. Identification and characterization of EX1 kinetics in H/D exchange mass spectrometry by peak width analysis.
    J Am Soc Mass Spectrom. 2006 Nov;17(11):1498-1509 PMID: 16875839
Article Info
Journal
Analytical and bioanalytical chemistry
Abbr.
Anal Bioanal Chem
ISSN
1618-2650
Published
2010-06-00
Epub
2010-00-01
Pages
967-72
Language
English
Region
Germany
NLM ID
101134327
PMCID
PMC2868954
Subset
IM
Grants
NIGMS NIH HHS · R01 GM070590 · United States
NIGMS NIH HHS · R01 GM086507-01 · United States
NIGMS NIH HHS · R01 GM086507 · United States
NIGMS NIH HHS · R01 GM070590-06 · United States
NIGMS NIH HHS · GM070590 · United States
NIGMS NIH HHS · R01-GM086507 · United States
Analysis Services
Analysis Services

Contact

No. 2 Wenbo Road, Zhangqiu District, Jinan, Shandong

Qilu Normal University · Genelibs Bioinformatics Lab

750 Shunhua Rd, Jinan

2F, Bldg F, University Science Park

Tel: 0531-88819269

WeChat Official Account

Follow our WeChat subscription account for real-time updates and the latest in medical and biological research.


Business Email

E-mail: product@genelibs.com