Home LiteratureArticle Details
PMID: 2013576 Published · ppublish English Journal Article Research Support, Non-U.S. Gov't Research Support, U.S. Gov't, P.H.S.

The virC and virD operons of the Agrobacterium Ti plasmid are regulated by the ros chromosomal gene: analysis of the cloned ros gene.

Journal of bacteriology ·Vol. 173 ·No. 8 ·1991-04-00 ·Pages 2608-16

Cooley MB, D'Souza MR, Kado CI

Abstract

The ros chromosomal gene is present in octopine and nopaline strains of Agrobacterium tumefaciens as well as in Rhizobium meliloti. This gene encodes a 15.5-kDa protein that specifically represses the virC and virD operons in the virulence region of the Ti plasmid. The ros gene was cloned from a genomic bank by electroporation and complementation in Agrobacterium cells. Reporter fusion to the ros gene indicates that the level of transcription is controlled in part by autoregulation. A consensus inverted repeat sequence present in the ros promoter and in the virC and virD promoters of pTiC58, pTiA6, and pRiA4b suggests that a specific Ros binding site exists in these promoters. In the virC and virD promoter region, this binding site is within a cluster of vir box consensus sequences in which the VirG protein binds. This suggests possible binding competition between Ros and VirG at the virC and virD promoters. That the Ros protein binds DNA is suggested by the presence of a 'zinc finger' consensus sequence in the protein.

Related Genes
MeSH Terms
Amino Acid Sequence Bacterial Proteins/biosynthesis Base Sequence Blotting, Southern Chromosome Deletion Cloning, Molecular DNA/analysis Escherichia coli/genetics Gene Expression Regulation, Bacterial Molecular Sequence Data Operon/genetics Plasmids Promoter Regions, Genetic/genetics Proto-Oncogene Proteins/genetics,physiology Receptor Protein-Tyrosine Kinases Restriction Mapping Rhizobium/genetics Sequence Homology, Nucleic Acid Transcription, Genetic Virulence Factors Zinc Fingers/genetics
Chemicals
Bacterial Proteins Proto-Oncogene Proteins Virulence Factors DNA Receptor Protein-Tyrosine Kinases
Authors & Affiliations
3 authors, click to expand affiliations / ORCID
Cooley M B
Davis Crown Gall Group, University of California, Davis 95616.
D'Souza M R
Kado C I
References (52)
52 references, click to expand
  1. Design and development of amplifiable broad-host-range cloning vectors: analysis of the vir region of Agrobacterium tumefaciens plasmid pTiC58.
    Plasmid. 1984 Sep;12(2):111-8 PMID: 6095350
  2. Novel high- and low-copy stable cosmids for use in Agrobacterium and Rhizobium.
    Plasmid. 1985 Sep;14(2):171-5 PMID: 3906714
  3. Broad host range DNA cloning system for gram-negative bacteria: construction of a gene bank of Rhizobium meliloti.
    Proc Natl Acad Sci U S A. 1980 Dec;77(12):7347-51 PMID: 7012838
  4. virA and virG control the plant-induced activation of the T-DNA transfer process of A. tumefaciens.
    Cell. 1986 Aug 1;46(3):325-33 PMID: 3731272
  5. An underlying repeat in some transcriptional control sequences corresponding to half a double helical turn of DNA.
    Cell. 1986 Jul 4;46(1):123-32 PMID: 3013416
  6. Exopolysaccharide-deficient mutants of Rhizobium meliloti that form ineffective nodules.
    Proc Natl Acad Sci U S A. 1985 Sep;82(18):6231-5 PMID: 3862129
  7. VirD2 gene product from the nopaline plasmid pTiC58 has at least two activities required for virulence.
    Nucleic Acids Res. 1990 Dec 11;18(23):6953-8 PMID: 2263456
  8. Two chromosomal loci involved in production of exopolysaccharide in Agrobacterium tumefaciens.
    J Bacteriol. 1989 Mar;171(3):1755-9 PMID: 2921249
  9. Transcriptional induction of an Agrobacterium regulatory gene at tandem promoters by plant-released phenolic compounds, phosphate starvation, and acidic growth media.
    J Bacteriol. 1990 May;172(5):2433-8 PMID: 2185220
  10. Molecular characterization of the vir regulon of Agrobacterium tumefaciens: complete nucleotide sequence and gene organization of the 28.63-kbp regulon cloned as a single unit.
    Plasmid. 1990 Mar;23(2):85-106 PMID: 2194232
  11. Association of the virD2 protein with the 5' end of T strands in Agrobacterium tumefaciens.
    J Bacteriol. 1988 Aug;170(8):3367-74 PMID: 3403506
  12. Specific binding of VirG to the vir box requires a C-terminal domain and exhibits a minimum concentration threshold.
    Mol Microbiol. 1990 Dec;4(12):2159-66 PMID: 2089226
  13. The genetic and transcriptional organization of the vir region of the A6 Ti plasmid of Agrobacterium tumefaciens.
    EMBO J. 1986 Jul;5(7):1445-54 PMID: 3017694
  14. Covalently bound VirD2 protein of Agrobacterium tumefaciens protects the T-DNA from exonucleolytic degradation.
    Proc Natl Acad Sci U S A. 1989 Dec;86(23):9154-8 PMID: 2556703
  15. High efficiency transformation of E. coli by high voltage electroporation.
    Nucleic Acids Res. 1988 Jul 11;16(13):6127-45 PMID: 3041370
  16. Sugars induce the Agrobacterium virulence genes through a periplasmic binding protein and a transmembrane signal protein.
    Proc Natl Acad Sci U S A. 1990 Sep;87(17):6708-12 PMID: 2118656
  17. DNA transfer from Agrobacterium to Zea mays or Brassica by agroinfection is dependent on bacterial virulence functions.
    Mol Gen Genet. 1989 Jun;217(2-3):309-16 PMID: 2770696
  18. The Agrobacterium tumefaciens virC1 gene product binds to overdrive, a T-DNA transfer enhancer.
    J Bacteriol. 1989 Dec;171(12):6845-9 PMID: 2592351
  19. Proposed structure for the zinc-binding domains from transcription factor IIIA and related proteins.
    Proc Natl Acad Sci U S A. 1988 Jan;85(1):99-102 PMID: 3124104
  20. Rhizobium meliloti mutants that overproduce the R. meliloti acidic calcofluor-binding exopolysaccharide.
    J Bacteriol. 1988 Sep;170(9):4249-56 PMID: 2842307
  21. The regulatory VirG protein specifically binds to a cis-acting regulatory sequence involved in transcriptional activation of Agrobacterium tumefaciens virulence genes.
    J Bacteriol. 1990 Feb;172(2):531-7 PMID: 2404941
  22. High levels of double-stranded transferred DNA (T-DNA) processing from an intact nopaline Ti plasmid.
    Proc Natl Acad Sci U S A. 1989 Apr;86(7):2133-7 PMID: 2928322
  23. Characterization of the virA locus of Agrobacterium tumefaciens: a transcriptional regulator and host range determinant.
    EMBO J. 1987 Apr;6(4):849-56 PMID: 3595559
  24. Chloramphenicol acetyltransferase from chloramphenicol-resistant bacteria.
    Methods Enzymol. 1975;43:737-55 PMID: 1094240
  25. Regulation of Ti plasmid virulence genes by a chromosomal locus of Agrobacterium tumefaciens.
    J Bacteriol. 1985 Nov;164(2):774-81 PMID: 4055699
  26. DNA sequencing with chain-terminating inhibitors.
    Proc Natl Acad Sci U S A. 1977 Dec;74(12):5463-7 PMID: 271968
  27. virG, an Agrobacterium tumefaciens transcriptional activator, initiates translation at a UUG codon and is a sequence-specific DNA-binding protein.
    J Bacteriol. 1990 Mar;172(3):1241-9 PMID: 2307647
  28. Unidirectional digestion with exonuclease III creates targeted breakpoints for DNA sequencing.
    Gene. 1984 Jun;28(3):351-9 PMID: 6235151
  29. The VirA protein of Agrobacterium tumefaciens is autophosphorylated and is essential for vir gene regulation.
    J Bacteriol. 1990 Feb;172(2):525-30 PMID: 2404940
  30. Control of expression of Agrobacterium vir genes by synergistic actions of phenolic signal molecules and monosaccharides.
    Proc Natl Acad Sci U S A. 1990 Sep;87(17):6684-8 PMID: 11607097
  31. Regulation of the vir genes of Agrobacterium tumefaciens plasmid pTiC58.
    J Bacteriol. 1987 Nov;169(11):5101-12 PMID: 2822665
  32. Primer-directed enzymatic amplification of DNA with a thermostable DNA polymerase.
    Science. 1988 Jan 29;239(4839):487-91 PMID: 2448875
  33. trans-Acting virulence functions of the octopine Ti plasmid from Agrobacterium tumefaciens.
    J Bacteriol. 1984 May;158(2):754-6 PMID: 6373732
  34. A comprehensive set of sequence analysis programs for the VAX.
    Nucleic Acids Res. 1984 Jan 11;12(1 Pt 1):387-95 PMID: 6546423
  35. The virD operon of Agrobacterium tumefaciens Ti plasmid encodes a DNA-relaxing enzyme.
    Proc Natl Acad Sci U S A. 1989 May;86(9):3109-13 PMID: 2541431
  36. A rapid alkaline extraction procedure for screening recombinant plasmid DNA.
    Nucleic Acids Res. 1979 Nov 24;7(6):1513-23 PMID: 388356
  37. Specificity of signal molecules in the activation of Agrobacterium virulence gene expression.
    Mol Microbiol. 1989 Jul;3(7):969-77 PMID: 2796734
  38. Regulation of the virC and virD promoters of pTiC58 by the ros chromosomal mutation of Agrobacterium tumefaciens.
    Mol Microbiol. 1988 May;2(3):385-92 PMID: 2840554
  39. Specialized vectors for members of Rhizobiaceae and other gram-negative bacteria.
    Biotechnology. 1988;10:333-42 PMID: 2850045
  40. virG of Agrobacterium tumefaciens plasmid pTiC58 encodes a DNA-binding protein.
    Mol Microbiol. 1989 Mar;3(3):411-9 PMID: 2664419
  41. Kanamycin-resistant vectors that are analogues of plasmids pUC8, pUC9, pEMBL8 and pEMBL9.
    Gene. 1986;41(2-3):337-42 PMID: 3011607
  42. Symbiotic mutants of Rhizobium meliloti that uncouple plant from bacterial differentiation.
    Cell. 1985 Apr;40(4):869-77 PMID: 2985267
  43. Dual control of Agrobacterium tumefaciens Ti plasmid virulence genes.
    J Bacteriol. 1987 Nov;169(11):5113-8 PMID: 3667525
  44. Broad-host-range plasmid cloning vectors for gram-negative bacteria.
    Biotechnology. 1988;10:287-332 PMID: 2850044
  45. Second symbiotic megaplasmid in Rhizobium meliloti carrying exopolysaccharide and thiamine synthesis genes.
    J Bacteriol. 1986 Jul;167(1):66-72 PMID: 3013840
  46. Repetitive zinc-binding domains in the protein transcription factor IIIA from Xenopus oocytes.
    EMBO J. 1985 Jun;4(6):1609-14 PMID: 4040853
  47. Zinc-finger motifs expressed in E. coli and folded in vitro direct specific binding to DNA.
    Nature. 1988 Mar 17;332(6161):284-6 PMID: 2831463
  48. The virD operon of Agrobacterium tumefaciens encodes a site-specific endonuclease.
    Cell. 1986 Nov 7;47(3):471-7 PMID: 3021341
  49. Mutational analysis of the virulence region of an Agrobacterium tumefaciens Ti plasmid.
    J Bacteriol. 1983 Feb;153(2):878-83 PMID: 6296058
  50. Single stranded DNA SP6 promoter plasmids for engineering mutant RNAs and proteins: synthesis of a 'stretched' preproparathyroid hormone.
    Nucleic Acids Res. 1985 Feb 25;13(4):1103-18 PMID: 3858795
  51. Prediction of the secondary structure of proteins from their amino acid sequence.
    Adv Enzymol Relat Areas Mol Biol. 1978;47:45-148 PMID: 364941
  52. VirA, a coregulator of Ti-specified virulence genes, is phosphorylated in vitro.
    J Bacteriol. 1990 Feb;172(2):1142-4 PMID: 2298696
Article Info
Journal
Journal of bacteriology
Abbr.
J Bacteriol
ISSN
0021-9193
Published
1991-04-00
Pages
2608-16
Language
English
Region
United States
NLM ID
2985120R
PMCID
PMC207827
Subset
IM
Grants
NCI NIH HHS · CA-11526-21 · United States
NIGMS NIH HHS · GM45550 · United States
Databases
GENBANK
M55488, M55489, M55490, M55491, M55492, M55493, M55494, M65201, M93063, M93064
Analysis Services
Analysis Services

Contact

No. 2 Wenbo Road, Zhangqiu District, Jinan, Shandong

Qilu Normal University · Genelibs Bioinformatics Lab

750 Shunhua Rd, Jinan

2F, Bldg F, University Science Park

Tel: 0531-88819269

WeChat Official Account

Follow our WeChat subscription account for real-time updates and the latest in medical and biological research.


Business Email

E-mail: product@genelibs.com