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PMID: 19920125 Published · ppublish English Journal Article Research Support, N.I.H., Extramural Research Support, Non-U.S. Gov't

ENCODE whole-genome data in the UCSC Genome Browser.

Nucleic acids research ·Vol. 38 ·No. Database issue ·2010-01-00 ·Pages D620-5

Rosenbloom KR, Dreszer TR, Pheasant M, Barber GP, Meyer LR, Pohl A, Raney BJ, Wang T, Hinrichs AS, Zweig AS, Fujita PA, Learned K, Rhead B, Smith KE, Kuhn RM, Karolchik D, Haussler D, Kent WJ

Abstract

The Encyclopedia of DNA Elements (ENCODE) project is an international consortium of investigators funded to analyze the human genome with the goal of producing a comprehensive catalog of functional elements. The ENCODE Data Coordination Center at The University of California, Santa Cruz (UCSC) is the primary repository for experimental results generated by ENCODE investigators. These results are captured in the UCSC Genome Bioinformatics database and download server for visualization and data mining via the UCSC Genome Browser and companion tools (Rhead et al. The UCSC Genome Browser Database: update 2010, in this issue). The ENCODE web portal at UCSC (http://encodeproject.org or http://genome.ucsc.edu/ENCODE) provides information about the ENCODE data and convenient links for access.

MeSH Terms

Animals Cell Line, Tumor Computational Biology/methods,trends Databases, Genetic Databases, Nucleic Acid Genome, Human Genomics Humans Information Storage and Retrieval/methods Internet Mice Sequence Alignment Software

Authors & Affiliations

18 authors, click to expand affiliations / ORCID

Rosenbloom Kate R

Center for Biomolecular Science and Engineering, School of Engineering, University of California, Santa Cruz, CA 95064, USA. kate@soe.ucsc.edu

Dreszer Timothy R

Pheasant Michael

Barber Galt P

Meyer Laurence R

Pohl Andy

Raney Brian J

Wang Ting

Hinrichs Angie S

Zweig Ann S

Fujita Pauline A

Learned Katrina

Rhead Brooke

Smith Kayla E

Kuhn Robert M

Karolchik Donna

Haussler David

Kent W James

References (8)

8 references, click to expand

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Article Info

Journal

Nucleic acids research

Abbr.

Nucleic Acids Res

ISSN

1362-4962

DOI

10.1093/nar/gkp961

kate@soe.ucsc.edu

Published

2010-01-00

Epub

2009-00-17

Pages

D620-5

Language

English

Region

England

NLM ID

0411011

PMCID

PMC2808953

Subset

Grants

NHGRI NIH HHS · U54 HG004555 · United States

Howard Hughes Medical Institute · United States

NHGRI NIH HHS · 5U41HG004568-02 · United States

NHGRI NIH HHS · P41HG002371-09 · United States

External Links

PubMed source DOI: 10.1093/nar/gkp961 PMC Full Text View journal details

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ENCODE whole-genome data in the UCSC Genome Browser.

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