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PMID: 19624129 Published · ppublish English Journal Article Research Support, N.I.H., Extramural Research Support, Non-U.S. Gov't Research Support, U.S. Gov't, Non-P.H.S.

Photoaffinity labeling via nitrenium ion chemistry: protonation of the nitrene derived from 4-amino-3-nitrophenyl azide to afford reactive nitrenium ion pairs.

Journal of the American Chemical Society ·Vol. 131 ·No. 32 ·2009-08-19 ·Pages 11535-47

Voskresenska V, Wilson RM, Panov M, Tarnovsky AN, Krause JA, Vyas S, Winter AH, Hadad CM

Abstract

Phenyl azides with powerful electron-donating substituents are known to deviate from the usual photochemical behavior of other phenyl azides. They do not undergo ring expansion but form basic nitrenes that protonate to form nitrenium ions. The photochemistry of the widely used photoaffinity labeling system 4-amino-3-nitrophenyl azide, 5, has been studied by transient absorption spectroscopy from femtosecond to microsecond time domains and from a theoretical perspective. The nitrene generation from azide 5 occurs on the S(2) surface, in violation of Kasha's rule. The resulting nitrene is a powerful base and abstracts protons extremely rapidly from a variety of sources to form a nitrenium ion. In methanol, this protonation occurs in about 5 ps, which is the fastest intermolecular protonation observed to date. Suitable proton sources include alcohols, amine salts, and even acidic C-H bonds such as acetonitrile. The resulting nitrenium ion is stabilized by the electron-donating 4-amino group to afford a diiminoquinone-like species that collapses relatively slowly to form the ultimate cross-linked product. In some cases in which the anion is a good hydride donor, cross-linking is replaced by reduction of the nitrenium ion to the corresponding amine.

MeSH Terms
Azides/chemistry Imines/chemistry Ions/chemistry Molecular Structure Photoaffinity Labels/chemistry Photochemistry Protons
Chemicals
Azides Imines Ions Photoaffinity Labels Protons 3-nitrophenyl azide phenylnitrene
Authors & Affiliations
8 authors, click to expand affiliations / ORCID
Voskresenska Valentyna
Department of Chemistry and the Center for Photochemical Sciences, Bowling Green State University, Bowling Green, Ohio 43403, USA.
Wilson R Marshall
Panov Maxim
Tarnovsky Alexander N
Krause Jeanette A
Vyas Shubham
Winter Arthur H
Hadad Christopher M
References (27)
27 references, click to expand
  1. Ultrafast study of p-biphenylyldiazomethane and p-biphenylylcarbene.
    J Org Chem. 2006 Aug 4;71(16):6221-8 PMID: 16872208
  2. Photolabeling of cardiolipin binding subunits within bovine heart cytochrome c oxidase.
    Biochemistry. 2006 Jan 24;45(3):746-54 PMID: 16411750
  3. Lifetimes and reactivities of some 1,2-didehydroazepines commonly used in photoaffinity labeling experiments in aqueous solutions.
    Biochemistry. 2006 Jan 17;45(2):543-51 PMID: 16401083
  4. Ultrafast spectroscopic and matrix isolation studies of p-biphenylyl, o-biphenylyl, and 1-naphthylnitrenium cations.
    J Am Chem Soc. 2007 Jul 4;129(26):8380-8 PMID: 17567009
  5. The C(19) position of 25-hydroxyvitamin D(3) faces outward in the vitamin D sterol-binding pocket of vitamin D-binding protein.
    Bioorg Med Chem Lett. 2002 Feb 11;12(3):279-81 PMID: 11814777
  6. Early events in the photochemistry of aryl azides from femtosecond UV/Vis spectroscopy and quantum chemical calculations.
    J Am Chem Soc. 2006 Oct 18;128(41):13402-11 PMID: 17031952
  7. Exploratory photochemistry of fluorinated aryl azides. Implications for the design of photoaffinity labeling reagents.
    Bioconjug Chem. 1993 Mar-Apr;4(2):172-7 PMID: 7873649
  8. Et tu, Grotthuss! and other unfinished stories.
    Biochim Biophys Acta. 2006 Aug;1757(8):876-85 PMID: 16414007
  9. Solvent effects on intermolecular proton transfer: the rates of nitrene protonation and their correlation with Swain acity.
    Org Lett. 2007 Dec 6;9(25):5211-4 PMID: 18001041
  10. Identification of the reactive intermediates produced upon photolysis of p-azidoacetophenone and its tetrafluoro analogue in aqueous and organic solvents: implications for photoaffinity labeling.
    Biochemistry. 2007 Feb 20;46(7):1981-7 PMID: 17253766
  11. Intermolecular insertion of an N,N-heterocyclic carbene into a nonacidic C-H bond: Kinetics, mechanism and catalysis by (K-HMDS)2 (HMDS = Hexamethyldisilazide).
    Chemistry. 2006 Jul 5;12(20):5361-75 PMID: 16673429
  12. Solvent reorganization controls the rate of proton transfer from neat alcohol solvents to singlet diphenylcarbene.
    J Am Chem Soc. 2002 Jun 5;124(22):6428-38 PMID: 12033874
  13. Ultrafast study of the photochemistry of 2-azidonitrobenzene.
    Org Lett. 2006 Apr 13;8(8):1637-40 PMID: 16597129
  14. Ultrafast study of 9-diazofluorene: direct observation of the first two singlet states of fluorenylidene.
    J Am Chem Soc. 2007 Nov 7;129(44):13683-90 PMID: 17935331
  15. The interplay of theory and experiment in the study of phenylnitrene.
    Acc Chem Res. 2000 Nov;33(11):765-71 PMID: 11087313
  16. Development of the Colle-Salvetti correlation-energy formula into a functional of the electron density.
    Phys Rev B Condens Matter. 1988 Jan 15;37(2):785-789 PMID: 9944570
  17. Solvent effects on the reactivity of fluorenyl nitrenium ion with DNA-like probes.
    Biophys Chem. 2006 Feb 1;119(3):213-8 PMID: 16242233
  18. Facile and efficient synthesis of 4-azidotetrafluoroaniline: a new photoaffinity reagent.
    J Org Chem. 2000 Aug 11;65(16):4949-53 PMID: 10956477
  19. Global and target analysis of time-resolved spectra.
    Biochim Biophys Acta. 2004 Jul 9;1657(2-3):82-104 PMID: 15238266
  20. A study of 2-azido-3,5-dichlorobiphenyl by nano- and picosecond laser flash photolysis and computational methods.
    Photochem Photobiol Sci. 2005 Jan;4(1):23-32 PMID: 15616688
  21. Solid supported fluoronitroaryl triazenes as immobilized and convertible Sanger reagents--synthesis and SNAr reactions towards a novel preparation of 1-alkyl-5-nitro-1H-benzotriazoles.
    Chem Commun (Camb). 2002 Jun 21;(12):1296-7 PMID: 12109123
  22. Carbazolyl nitrenium ion: electron configuration and antiaromaticity assessed by laser flash photolysis, trapping rate constants, product analysis, and computational studies.
    J Org Chem. 2007 Oct 26;72(22):8186-95 PMID: 17892298
  23. Ultrafast study of p-biphenylyldiazoethane. The chemistry of the diazo excited state and the relaxed carbene.
    J Am Chem Soc. 2007 Mar 7;129(9):2597-606 PMID: 17290992
  24. Synthesis of radioactive and photoactivable ganglioside derivatives for the study of ganglioside-protein interactions.
    Glycoconj J. 2004;20(1):11-23 PMID: 14973366
  25. A laser flash photolysis study of di-, tri- and tetrafluorinated phenylnitrenes; implications for photoaffinity labeling.
    Bioconjug Chem. 1993 Mar-Apr;4(2):178-83 PMID: 7873650
  26. Special pair dance and partner selection: elementary steps in proton transport in liquid water.
    J Phys Chem B. 2008 Aug 7;112(31):9456-66 PMID: 18630857
  27. Computer simulation of proton solvation and transport in aqueous and biomolecular systems.
    Acc Chem Res. 2006 Feb;39(2):143-50 PMID: 16489734
Article Info
Journal
Journal of the American Chemical Society
Abbr.
J Am Chem Soc
ISSN
1520-5126
Published
2009-08-19
Pages
11535-47
Language
English
Region
United States
NLM ID
7503056
PMCID
PMC2740327
Subset
IM
Grants
NINDS NIH HHS · U54 NS058183 · United States
NINDS NIH HHS · U54 NS058183-010004 · United States
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