RNA secondary structure analysis using the Vienna RNA package.

Current protocols in bioinformatics ·Vol. Chapter 12 ·2009-06-00 ·Pages Unit12.2

Hofacker IL

Abstract

This unit documents how to use the Vienna RNA package for RNA secondary structure analysis. Possible tasks include structure prediction for single sequences, prediction of consensus structures, prediction of RNA-RNA interactions, and sequence design.

MeSH Terms

Algorithms Base Sequence Molecular Sequence Data Nucleic Acid Conformation RNA/chemistry Sequence Analysis, RNA/methods Software

Chemicals

RNA

Authors & Affiliations

1 authors, click to expand affiliations / ORCID

Hofacker Ivo L

University of Vienna-Institute of Theoretical Chemistry, Vienna, Austria.

Article Info

Journal

Current protocols in bioinformatics

Abbr.

Curr Protoc Bioinformatics

ISSN

1934-340X

DOI

10.1002/0471250953.bi1202s26

Published

2009-06-00

Pages

Unit12.2

Language

English

Region

United States

NLM ID

101157830

Subset

External Links

PubMed source DOI: 10.1002/0471250953.bi1202s26

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RNA secondary structure analysis using the Vienna RNA package.

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