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PMID: 19429897 Published · ppublish English Journal Article Research Support, Non-U.S. Gov't

Writing DNA with GenoCAD.

Nucleic acids research ·Vol. 37 ·No. Web Server issue ·2009-07-00 ·Pages W40-7

Czar MJ, Cai Y, Peccoud J

Abstract

Chemical synthesis of custom DNA made to order calls for software streamlining the design of synthetic DNA sequences. GenoCAD (www.genocad.org) is a free web-based application to design protein expression vectors, artificial gene networks and other genetic constructs composed of multiple functional blocks called genetic parts. By capturing design strategies in grammatical models of DNA sequences, GenoCAD guides the user through the design process. By successively clicking on icons representing structural features or actual genetic parts, complex constructs composed of dozens of functional blocks can be designed in a matter of minutes. GenoCAD automatically derives the construct sequence from its comprehensive libraries of genetic parts. Upon completion of the design process, users can download the sequence for synthesis or further analysis. Users who elect to create a personal account on the system can customize their workspace by creating their own parts libraries, adding new parts to the libraries, or reusing designs to quickly generate sets of related constructs.

MeSH Terms
Base Sequence DNA/chemical synthesis,chemistry Genes, Synthetic Genetic Engineering Software User-Computer Interface
Chemicals
DNA
Authors & Affiliations
3 authors, click to expand affiliations / ORCID
Czar Michael J
Virginia Bioinformatics Institute at Virginia Polytechnic and State University, Blacksburg, VA 24061, USA.
Cai Yizhi
Peccoud Jean
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Article Info
Journal
Nucleic acids research
Abbr.
Nucleic Acids Res
ISSN
1362-4962
Published
2009-07-00
Epub
2009-00-08
Pages
W40-7
Language
English
Region
England
NLM ID
0411011
PMCID
PMC2703884
Subset
IM
Analysis Services
Analysis Services

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