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PMID: 19189978 Published · ppublish English Journal Article Research Support, Non-U.S. Gov't

VANO: a volume-object image annotation system.

Bioinformatics (Oxford, England) ·Vol. 25 ·No. 5 ·2009-03-01 ·Pages 695-7

Peng H, Long F, Myers EW

Abstract

Volume-object annotation system (VANO) is a cross-platform image annotation system that enables one to conveniently visualize and annotate 3D volume objects including nuclei and cells. An application of VANO typically starts with an initial collection of objects produced by a segmentation computation. The objects can then be labeled, categorized, deleted, added, split, merged and redefined. VANO has been used to build high-resolution digital atlases of the nuclei of Caenorhabditis elegans at the L1 stage and the nuclei of Drosophila melanogaster's ventral nerve cord at the late embryonic stage. Platform independent executables of VANO, a sample dataset, and a detailed description of both its design and usage are available at research.janelia.org/peng/proj/vano. VANO is open-source for co-development.

MeSH Terms
Animals Caenorhabditis elegans/metabolism Databases, Factual Drosophila/metabolism Image Processing, Computer-Assisted/methods Software User-Computer Interface
Authors & Affiliations
3 authors, click to expand affiliations / ORCID
Peng Hanchuan
Janelia Farm Research Campus, Howard Hughes Medical Institute, Ashburn, Virginia, VA, USA. pengh@janelia.hhmi.org
Long Fuhui
Myers Eugene W
References (3)
3 references, click to expand
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  2. Straightening Caenorhabditis elegans images.
    Bioinformatics. 2008 Jan 15;24(2):234-42 PMID: 18025002
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Article Info
Journal
Bioinformatics (Oxford, England)
Abbr.
Bioinformatics
ISSN
1367-4811
Published
2009-03-01
Epub
2009-00-02
Pages
695-7
Language
English
Region
England
NLM ID
9808944
PMCID
PMC2647838
Subset
IM
Grants
Howard Hughes Medical Institute · United States
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