Abstract
Autonomous and self-sustained oscillator circuits mediating the periodic induction of specific target genes are minimal genetic time-keeping devices found in the central and peripheral circadian clocks. They have attracted significant attention because of their intriguing dynamics and their importance in controlling critical repair, metabolic and signalling pathways. The precise molecular mechanism and expression dynamics of this mammalian circadian clock are still not fully understood. Here we describe a synthetic mammalian oscillator based on an auto-regulated sense-antisense transcription control circuit encoding a positive and a time-delayed negative feedback loop, enabling autonomous, self-sustained and tunable oscillatory gene expression. After detailed systems design with experimental analyses and mathematical modelling, we monitored oscillating concentrations of green fluorescent protein with tunable frequency and amplitude by time-lapse microscopy in real time in individual Chinese hamster ovary cells. The synthetic mammalian clock may provide an insight into the dynamics of natural periodic processes and foster advances in the design of prosthetic networks in future gene and cell therapies.
MeSH Terms
Animals
Biological Clocks/physiology
CHO Cells
Circadian Rhythm/physiology
Cricetinae
Cricetulus
Feedback, Physiological
Fluorescence
Gene Expression Regulation/genetics
Genes, Synthetic/genetics
Genetic Engineering
Green Fluorescent Proteins/analysis,genetics,metabolism
Models, Biological
Reproducibility of Results
Time Factors
Transcription, Genetic
Chemicals
Green Fluorescent Proteins
Authors & Affiliations
4 authors, click to expand affiliations / ORCID
Tigges Marcel
Department of Biosystems Science and Engineering, ETH Zurich, Mattenstrasse 26, CH-4058 Basel, Switzerland.
Marquez-Lago Tatiana T
Stelling Jörg
Fussenegger Martin
References (29)
29 references, click to expand
-
Physiology. Biological clocks coordinately keep life on time.
Science. 2005 Aug 19;309(5738):1196-8
PMID: 16109872
-
Disintegration of the sleep-wake cycle and circadian timing in Huntington's disease.
J Neurosci. 2005 Jan 5;25(1):157-63
PMID: 15634777
-
Circadian clocks and natural antisense RNA.
FEBS Lett. 2004 Jun 1;567(1):49-54
PMID: 15165892
-
Extensive and divergent circadian gene expression in liver and heart.
Nature. 2002 May 2;417(6884):78-83
PMID: 11967526
-
A synthetic oscillatory network of transcriptional regulators.
Nature. 2000 Jan 20;403(6767):335-8
PMID: 10659856
-
A synthetic gene-metabolic oscillator.
Nature. 2005 May 5;435(7038):118-22
PMID: 15875027
-
A proteolytic pathway that recognizes ubiquitin as a degradation signal.
J Biol Chem. 1995 Jul 21;270(29):17442-56
PMID: 7615550
-
Tight control of gene expression in mammalian cells by tetracycline-responsive promoters.
Proc Natl Acad Sci U S A. 1992 Jun 15;89(12):5547-51
PMID: 1319065
-
Transgene control engineering in mammalian cells.
Methods Mol Biol. 2005;308:123-43
PMID: 16082031
-
Circadian gene expression in individual fibroblasts: cell-autonomous and self-sustained oscillators pass time to daughter cells.
Cell. 2004 Nov 24;119(5):693-705
PMID: 15550250
-
From in vivo to in silico biology and back.
Nature. 2006 Oct 5;443(7111):527-33
PMID: 17024084
-
The strength of indecisiveness: oscillatory behavior for better cell fate determination.
Sci STKE. 2004 Dec 21;2004(264):pe55
PMID: 15613687
-
Mechanisms of noise-resistance in genetic oscillators.
Proc Natl Acad Sci U S A. 2002 Apr 30;99(9):5988-92
PMID: 11972055
-
Toward construction of a self-sustained clock-like expression system based on the mammalian circadian clock.
Biotechnol Bioeng. 2004 Jul 20;87(2):234-42
PMID: 15236253
-
Cellular gene dose and kinetics of gene expression in mouse livers transfected by high-volume tail-vein injection of naked DNA.
DNA Cell Biol. 2002 Nov;21(11):847-53
PMID: 12489995
-
Dual-regulated expression technology: a new era in the adjustment of heterologous gene expression in mammalian cells.
J Gene Med. 2001 Nov-Dec;3(6):529-49
PMID: 11778900
-
Streptogramin-based gene regulation systems for mammalian cells.
Nat Biotechnol. 2000 Nov;18(11):1203-8
PMID: 11062442
-
Engineered gene circuits.
Nature. 2002 Nov 14;420(6912):224-30
PMID: 12432407
-
Reciprocal regulation of haem biosynthesis and the circadian clock in mammals.
Nature. 2004 Jul 22;430(6998):467-71
PMID: 15269772
-
Controlled proliferation by multigene metabolic engineering enhances the productivity of Chinese hamster ovary cells.
Nat Biotechnol. 1998 May;16(5):468-72
PMID: 9592397
-
Coordination of circadian timing in mammals.
Nature. 2002 Aug 29;418(6901):935-41
PMID: 12198538
-
Gene regulation at the single-cell level.
Science. 2005 Mar 25;307(5717):1962-5
PMID: 15790856
-
Role of the CLOCK protein in the mammalian circadian mechanism.
Science. 1998 Jun 5;280(5369):1564-9
PMID: 9616112
-
Achieving stability of lipopolysaccharide-induced NF-kappaB activation.
Science. 2005 Sep 16;309(5742):1854-7
PMID: 16166516
-
Streptogramin- and tetracycline-responsive dual regulated expression of p27(Kip1) sense and antisense enables positive and negative growth control of Chinese hamster ovary cells.
Nucleic Acids Res. 2001 Feb 15;29(4):E19
PMID: 11160939
-
Pineal clock gene oscillation is disturbed in Alzheimer's disease, due to functional disconnection from the "master clock".
FASEB J. 2006 Sep;20(11):1874-6
PMID: 16818472
-
A web of circadian pacemakers.
Cell. 2002 Dec 27;111(7):919-22
PMID: 12507418
-
Development of genetic circuitry exhibiting toggle switch or oscillatory behavior in Escherichia coli.
Cell. 2003 May 30;113(5):597-607
PMID: 12787501
-
Forward genetic approach strikes gold: cloning of a mammalian clock gene.
Cell. 1997 May 16;89(4):487-90
PMID: 9160739