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PMID: 19148099 Published · ppublish English Journal Article Research Support, Non-U.S. Gov't

A tunable synthetic mammalian oscillator.

Nature ·Vol. 457 ·No. 7227 ·2009-01-15 ·Pages 309-12

Tigges M, Marquez-Lago TT, Stelling J, Fussenegger M

Abstract

Autonomous and self-sustained oscillator circuits mediating the periodic induction of specific target genes are minimal genetic time-keeping devices found in the central and peripheral circadian clocks. They have attracted significant attention because of their intriguing dynamics and their importance in controlling critical repair, metabolic and signalling pathways. The precise molecular mechanism and expression dynamics of this mammalian circadian clock are still not fully understood. Here we describe a synthetic mammalian oscillator based on an auto-regulated sense-antisense transcription control circuit encoding a positive and a time-delayed negative feedback loop, enabling autonomous, self-sustained and tunable oscillatory gene expression. After detailed systems design with experimental analyses and mathematical modelling, we monitored oscillating concentrations of green fluorescent protein with tunable frequency and amplitude by time-lapse microscopy in real time in individual Chinese hamster ovary cells. The synthetic mammalian clock may provide an insight into the dynamics of natural periodic processes and foster advances in the design of prosthetic networks in future gene and cell therapies.

MeSH Terms
Animals Biological Clocks/physiology CHO Cells Circadian Rhythm/physiology Cricetinae Cricetulus Feedback, Physiological Fluorescence Gene Expression Regulation/genetics Genes, Synthetic/genetics Genetic Engineering Green Fluorescent Proteins/analysis,genetics,metabolism Models, Biological Reproducibility of Results Time Factors Transcription, Genetic
Chemicals
Green Fluorescent Proteins
Authors & Affiliations
4 authors, click to expand affiliations / ORCID
Tigges Marcel
Department of Biosystems Science and Engineering, ETH Zurich, Mattenstrasse 26, CH-4058 Basel, Switzerland.
Marquez-Lago Tatiana T
Stelling Jörg
Fussenegger Martin
References (29)
29 references, click to expand
  1. Physiology. Biological clocks coordinately keep life on time.
    Science. 2005 Aug 19;309(5738):1196-8 PMID: 16109872
  2. Disintegration of the sleep-wake cycle and circadian timing in Huntington's disease.
    J Neurosci. 2005 Jan 5;25(1):157-63 PMID: 15634777
  3. Circadian clocks and natural antisense RNA.
    FEBS Lett. 2004 Jun 1;567(1):49-54 PMID: 15165892
  4. Extensive and divergent circadian gene expression in liver and heart.
    Nature. 2002 May 2;417(6884):78-83 PMID: 11967526
  5. A synthetic oscillatory network of transcriptional regulators.
    Nature. 2000 Jan 20;403(6767):335-8 PMID: 10659856
  6. A synthetic gene-metabolic oscillator.
    Nature. 2005 May 5;435(7038):118-22 PMID: 15875027
  7. A proteolytic pathway that recognizes ubiquitin as a degradation signal.
    J Biol Chem. 1995 Jul 21;270(29):17442-56 PMID: 7615550
  8. Tight control of gene expression in mammalian cells by tetracycline-responsive promoters.
    Proc Natl Acad Sci U S A. 1992 Jun 15;89(12):5547-51 PMID: 1319065
  9. Transgene control engineering in mammalian cells.
    Methods Mol Biol. 2005;308:123-43 PMID: 16082031
  10. Circadian gene expression in individual fibroblasts: cell-autonomous and self-sustained oscillators pass time to daughter cells.
    Cell. 2004 Nov 24;119(5):693-705 PMID: 15550250
  11. From in vivo to in silico biology and back.
    Nature. 2006 Oct 5;443(7111):527-33 PMID: 17024084
  12. The strength of indecisiveness: oscillatory behavior for better cell fate determination.
    Sci STKE. 2004 Dec 21;2004(264):pe55 PMID: 15613687
  13. Mechanisms of noise-resistance in genetic oscillators.
    Proc Natl Acad Sci U S A. 2002 Apr 30;99(9):5988-92 PMID: 11972055
  14. Toward construction of a self-sustained clock-like expression system based on the mammalian circadian clock.
    Biotechnol Bioeng. 2004 Jul 20;87(2):234-42 PMID: 15236253
  15. Cellular gene dose and kinetics of gene expression in mouse livers transfected by high-volume tail-vein injection of naked DNA.
    DNA Cell Biol. 2002 Nov;21(11):847-53 PMID: 12489995
  16. Dual-regulated expression technology: a new era in the adjustment of heterologous gene expression in mammalian cells.
    J Gene Med. 2001 Nov-Dec;3(6):529-49 PMID: 11778900
  17. Streptogramin-based gene regulation systems for mammalian cells.
    Nat Biotechnol. 2000 Nov;18(11):1203-8 PMID: 11062442
  18. Engineered gene circuits.
    Nature. 2002 Nov 14;420(6912):224-30 PMID: 12432407
  19. Reciprocal regulation of haem biosynthesis and the circadian clock in mammals.
    Nature. 2004 Jul 22;430(6998):467-71 PMID: 15269772
  20. Controlled proliferation by multigene metabolic engineering enhances the productivity of Chinese hamster ovary cells.
    Nat Biotechnol. 1998 May;16(5):468-72 PMID: 9592397
  21. Coordination of circadian timing in mammals.
    Nature. 2002 Aug 29;418(6901):935-41 PMID: 12198538
  22. Gene regulation at the single-cell level.
    Science. 2005 Mar 25;307(5717):1962-5 PMID: 15790856
  23. Role of the CLOCK protein in the mammalian circadian mechanism.
    Science. 1998 Jun 5;280(5369):1564-9 PMID: 9616112
  24. Achieving stability of lipopolysaccharide-induced NF-kappaB activation.
    Science. 2005 Sep 16;309(5742):1854-7 PMID: 16166516
  25. Streptogramin- and tetracycline-responsive dual regulated expression of p27(Kip1) sense and antisense enables positive and negative growth control of Chinese hamster ovary cells.
    Nucleic Acids Res. 2001 Feb 15;29(4):E19 PMID: 11160939
  26. Pineal clock gene oscillation is disturbed in Alzheimer's disease, due to functional disconnection from the "master clock".
    FASEB J. 2006 Sep;20(11):1874-6 PMID: 16818472
  27. A web of circadian pacemakers.
    Cell. 2002 Dec 27;111(7):919-22 PMID: 12507418
  28. Development of genetic circuitry exhibiting toggle switch or oscillatory behavior in Escherichia coli.
    Cell. 2003 May 30;113(5):597-607 PMID: 12787501
  29. Forward genetic approach strikes gold: cloning of a mammalian clock gene.
    Cell. 1997 May 16;89(4):487-90 PMID: 9160739
Article Info
Journal
Nature
Abbr.
Nature
ISSN
1476-4687
Published
2009-01-15
Pages
309-12
Language
English
Region
England
NLM ID
0410462
Subset
IM
Corrections
CommentIn
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