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PMID: 19075292 Published · ppublish English Journal Article Research Support, Non-U.S. Gov't

Involvement of Artemis in nonhomologous end-joining during immunoglobulin class switch recombination.

The Journal of experimental medicine ·Vol. 205 ·No. 13 ·2008-12-22 ·Pages 3031-40

Du L, van der Burg M, Popov SW, Kotnis A, van Dongen JJ, Gennery AR, Pan-Hammarström Q

Abstract

DNA double-strand breaks (DSBs) introduced in the switch (S) regions are intermediates during immunoglobulin class switch recombination (CSR). These breaks are subsequently recognized, processed, and joined, leading to recombination of the two S regions. Nonhomologous end-joining (NHEJ) is believed to be the principle mechanism involved in DSB repair during CSR. One important component in NHEJ, Artemis, has however been considered to be dispensable for efficient CSR. In this study, we have characterized the S recombinational junctions from Artemis-deficient human B cells. Smu-Salpha junctions could be amplified from all patients tested and were characterized by a complete lack of "direct" end-joining and a remarkable shift in the use of an alternative, microhomology-based end-joining pathway. Smu-Sgamma junctions could only be amplified from one patient who carries "hypomorphic" mutations. Although these Smu-Sgamma junctions appear to be normal, a significant increase of an unusual type of sequential switching from immunoglobulin (Ig)M, through one IgG subclass, to a different IgG subclass was observed, and the Sgamma-Sgamma junctions showed long microhomologies. Thus, when the function of Artemis is impaired, varying modes of CSR junction resolution may be used for different S regions. Our findings strongly link Artemis to the predominant NHEJ pathway during CSR.

MeSH Terms
Adult B-Lymphocytes/immunology,physiology Base Sequence Child Child, Preschool DNA Breaks, Double-Stranded DNA Repair DNA-Binding Proteins Endonucleases Humans Immunoglobulin Class Switching Immunoglobulins/blood,immunology Infant Molecular Sequence Data Mutation Nuclear Proteins/genetics,metabolism Recombination, Genetic Sequence Alignment
Chemicals
DNA-Binding Proteins Immunoglobulins Nuclear Proteins DCLRE1C protein, human Endonucleases
Authors & Affiliations
7 authors, click to expand affiliations / ORCID
Du Likun
Clinical Immunology, Department of Laboratory Medicine, Karolinska Institutet at Karolinska University Hospital Huddinge, Stockholm, Sweden.
van der Burg Mirjam
Popov Sergey W
Kotnis Ashwin
van Dongen Jacques J M
Gennery Andrew R
Pan-Hammarström Qiang
References (43)
43 references, click to expand
  1. Cernunnos, a novel nonhomologous end-joining factor, is mutated in human immunodeficiency with microcephaly.
    Cell. 2006 Jan 27;124(2):287-99 PMID: 16439204
  2. Characterization of human gamma 4 switch region polymorphisms suggests a meiotic recombinational hot spot within the Ig locus: influence of S region length on IgG4 production.
    J Immunol. 1998 Oct 1;161(7):3520-6 PMID: 9759872
  3. Alternative end joining during switch recombination in patients with ataxia-telangiectasia.
    Eur J Immunol. 2002 May;32(5):1300-8 PMID: 11981817
  4. The mechanism of human nonhomologous DNA end joining.
    J Biol Chem. 2008 Jan 4;283(1):1-5 PMID: 17999957
  5. Radiosensitive SCID patients with Artemis gene mutations show a complete B-cell differentiation arrest at the pre-B-cell receptor checkpoint in bone marrow.
    Blood. 2003 Feb 15;101(4):1446-52 PMID: 12406895
  6. Disparate roles of ATR and ATM in immunoglobulin class switch recombination and somatic hypermutation.
    J Exp Med. 2006 Jan 23;203(1):99-110 PMID: 16390936
  7. IgH class switching and translocations use a robust non-classical end-joining pathway.
    Nature. 2007 Sep 27;449(7161):478-82 PMID: 17713479
  8. Gross deletions involving IGHM, BTK, or Artemis: a model for genomic lesions mediated by transposable elements.
    Am J Hum Genet. 2008 Feb;82(2):320-32 PMID: 18252213
  9. Combined immunodeficiency associated with increased apoptosis of lymphocytes and radiosensitivity fibroblasts.
    Cancer Res. 1999 Jul 15;59(14):3454-60 PMID: 10416610
  10. Regulation of switching and production of IgA in human B cells in donors with duplicated alpha1 genes.
    Eur J Immunol. 2001 Dec;31(12):3622-30 PMID: 11745382
  11. Impact of DNA ligase IV on nonhomologous end joining pathways during class switch recombination in human cells.
    J Exp Med. 2005 Jan 17;201(2):189-94 PMID: 15657289
  12. Mechanism and regulation of human non-homologous DNA end-joining.
    Nat Rev Mol Cell Biol. 2003 Sep;4(9):712-20 PMID: 14506474
  13. Ku80 is required for immunoglobulin isotype switching.
    EMBO J. 1998 Apr 15;17(8):2404-11 PMID: 9545251
  14. Rag mutations reveal robust alternative end joining.
    Nature. 2007 Sep 27;449(7161):483-6 PMID: 17898768
  15. Lymphocyte-specific compensation for XLF/cernunnos end-joining functions in V(D)J recombination.
    Mol Cell. 2008 Sep 5;31(5):631-40 PMID: 18775323
  16. Omenn syndrome due to ARTEMIS mutations.
    Blood. 2005 Jun 1;105(11):4179-86 PMID: 15731174
  17. Class switch recombination: a comparison between mouse and human.
    Adv Immunol. 2007;93:1-61 PMID: 17383538
  18. A backup DNA repair pathway moves to the forefront.
    Cell. 2007 Oct 19;131(2):223-5 PMID: 17956720
  19. Coordinate 5' and 3' endonucleolytic trimming of terminally blocked blunt DNA double-strand break ends by Artemis nuclease and DNA-dependent protein kinase.
    Nucleic Acids Res. 2008 Jun;36(10):3354-65 PMID: 18440975
  20. The SCID but not the RAG-2 gene product is required for S mu-S epsilon heavy chain class switching.
    Immunity. 1996 Oct;5(4):319-30 PMID: 8885865
  21. DNA-PKcs dependence of Artemis endonucleolytic activity, differences between hairpins and 5' or 3' overhangs.
    J Biol Chem. 2006 Nov 10;281(45):33900-9 PMID: 16914548
  22. Allotype-associated variation in the human gamma3 switch region as a basis for differences in IgG3 production.
    J Immunol. 1997 Jun 15;158(12):5849-59 PMID: 9190937
  23. Artemis-independent functions of DNA-dependent protein kinase in Ig heavy chain class switch recombination and development.
    Proc Natl Acad Sci U S A. 2005 Feb 15;102(7):2471-5 PMID: 15699324
  24. Mechanism and control of V(D)J recombination at the immunoglobulin heavy chain locus.
    Annu Rev Immunol. 2006;24:541-70 PMID: 16551259
  25. Human Ig S gamma regions and their participation in sequential switching to IgE.
    J Immunol. 1995 Sep 15;155(6):3021-36 PMID: 7673720
  26. Artemis, a novel DNA double-strand break repair/V(D)J recombination protein, is mutated in human severe combined immune deficiency.
    Cell. 2001 Apr 20;105(2):177-86 PMID: 11336668
  27. Activation-induced cytidine deaminase-dependent DNA breaks in class switch recombination occur during G1 phase of the cell cycle and depend upon mismatch repair.
    J Immunol. 2007 Nov 1;179(9):6064-71 PMID: 17947680
  28. ATM is not required in somatic hypermutation of VH, but is involved in the introduction of mutations in the switch mu region.
    J Immunol. 2003 Apr 1;170(7):3707-16 PMID: 12646636
  29. Partial T and B lymphocyte immunodeficiency and predisposition to lymphoma in patients with hypomorphic mutations in Artemis.
    J Clin Invest. 2003 Feb;111(3):381-7 PMID: 12569164
  30. Radiation-induced delayed cell death in a hypomorphic Artemis cell line.
    Hum Mol Genet. 2006 Apr 15;15(8):1303-11 PMID: 16540517
  31. Non-homologous end joining in class switch recombination: the beginning of the end.
    Philos Trans R Soc Lond B Biol Sci. 2009 Mar 12;364(1517):653-65 PMID: 19008195
  32. Hairpin opening and overhang processing by an Artemis/DNA-dependent protein kinase complex in nonhomologous end joining and V(D)J recombination.
    Cell. 2002 Mar 22;108(6):781-94 PMID: 11955432
  33. Defective Artemis nuclease is characterized by coding joints with microhomology in long palindromic-nucleotide stretches.
    Eur J Immunol. 2007 Dec;37(12):3522-8 PMID: 18034425
  34. A primary immunodeficiency characterized by defective immunoglobulin class switch recombination and impaired DNA repair.
    J Exp Med. 2007 May 14;204(5):1207-16 PMID: 17485519
  35. Ku70 is required for late B cell development and immunoglobulin heavy chain class switching.
    J Exp Med. 1998 Jun 15;187(12):2081-9 PMID: 9625768
  36. XLF interacts with the XRCC4-DNA ligase IV complex to promote DNA nonhomologous end-joining.
    Cell. 2006 Jan 27;124(2):301-13 PMID: 16439205
  37. Defective DNA repair and increased genomic instability in Artemis-deficient murine cells.
    J Exp Med. 2003 Mar 3;197(5):553-65 PMID: 12615897
  38. Mechanism and regulation of class switch recombination.
    Annu Rev Immunol. 2008;26:261-92 PMID: 18370922
  39. DNA-PKcs and Artemis function in the end-joining phase of immunoglobulin heavy chain class switch recombination.
    J Exp Med. 2008 Mar 17;205(3):557-64 PMID: 18316419
  40. The Artemis:DNA-PKcs endonuclease cleaves DNA loops, flaps, and gaps.
    DNA Repair (Amst). 2005 Jul 12;4(7):845-51 PMID: 15936993
  41. Interplay between Ku, Artemis, and the DNA-dependent protein kinase catalytic subunit at DNA ends.
    J Biol Chem. 2006 Sep 22;281(38):27784-93 PMID: 16857680
  42. Cernunnos/XLF promotes the ligation of mismatched and noncohesive DNA ends.
    Proc Natl Acad Sci U S A. 2007 May 8;104(19):7851-6 PMID: 17470781
  43. A pathway of double-strand break rejoining dependent upon ATM, Artemis, and proteins locating to gamma-H2AX foci.
    Mol Cell. 2004 Dec 3;16(5):715-24 PMID: 15574327
Article Info
Journal
The Journal of experimental medicine
Abbr.
J Exp Med
ISSN
1540-9538
Published
2008-12-22
Epub
2008-00-15
Pages
3031-40
Language
English
Region
United States
NLM ID
2985109R
PMCID
PMC2605234
Subset
IM
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