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PMID: 18978022 Published · ppublish English Journal Article Research Support, Non-U.S. Gov't

Sys-BodyFluid: a systematical database for human body fluid proteome research.

Nucleic acids research ·Vol. 37 ·No. Database issue ·2009-01-00 ·Pages D907-12

Li SJ, Peng M, Li H, Liu BS, Wang C, Wu JR, Li YX, Zeng R

Abstract

Recently, body fluids have widely become an important target for proteomic research and proteomic study has produced more and more body fluid related protein data. A database is needed to collect and analyze these proteome data. Thus, we developed this web-based body fluid proteome database Sys-BodyFluid. It contains eleven kinds of body fluid proteomes, including plasma/serum, urine, cerebrospinal fluid, saliva, bronchoalveolar lavage fluid, synovial fluid, nipple aspirate fluid, tear fluid, seminal fluid, human milk and amniotic fluid. Over 10,000 proteins are presented in the Sys-BodyFluid. Sys-BodyFluid provides the detailed protein annotations, including protein description, Gene Ontology, domain information, protein sequence and involved pathways. These proteome data can be retrieved by using protein name, protein accession number and sequence similarity. In addition, users can query between these different body fluids to get the different proteins identification information. Sys-BodyFluid database can facilitate the body fluid proteomics and disease proteomics research as a reference database. It is available at http://www.biosino.org/bodyfluid/.

MeSH Terms
Body Fluids/chemistry,metabolism Databases, Protein Humans Proteins/chemistry,genetics,metabolism Proteome/analysis Proteomics Research
Chemicals
Proteins Proteome
Authors & Affiliations
8 authors, click to expand affiliations / ORCID
Li Su-Jun
Key Laboratory of Systems Biology, Institute of Biochemistry and Cell Biology, Shanghai Institutes for Biological Sciences, Chinese Academy of Sciences, Shanghai 200031, China.
Peng Mao
Li Hong
Liu Bo-Shu
Wang Chuan
Wu Jia-Rui
Li Yi-Xue
Zeng Rong
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Article Info
Journal
Nucleic acids research
Abbr.
Nucleic Acids Res
ISSN
1362-4962
DOI
10.1093/nar/gkn849
Published
2009-01-00
Epub
2008-00-31
Pages
D907-12
Language
English
Region
England
NLM ID
0411011
PMCID
PMC2686600
Subset
IM
External Links
PubMed source DOI: 10.1093/nar/gkn849 PMC Full Text View journal details
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