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PMID: 18948289 Published · ppublish English Journal Article Research Support, N.I.H., Extramural Research Support, Non-U.S. Gov't

FlyBase: enhancing Drosophila Gene Ontology annotations.

Nucleic acids research ·Vol. 37 ·No. Database issue ·2009-01-00 ·Pages D555-9

Tweedie S, Ashburner M, Falls K, Leyland P, McQuilton P, Marygold S, Millburn G, Osumi-Sutherland D, Schroeder A, Seal R, Zhang H, FlyBase Consortium

Abstract

FlyBase (http://flybase.org) is a database of Drosophila genetic and genomic information. Gene Ontology (GO) terms are used to describe three attributes of wild-type gene products: their molecular function, the biological processes in which they play a role, and their subcellular location. This article describes recent changes to the FlyBase GO annotation strategy that are improving the quality of the GO annotation data. Many of these changes stem from our participation in the GO Reference Genome Annotation Project--a multi-database collaboration producing comprehensive GO annotation sets for 12 diverse species.

MeSH Terms
Animals Databases, Genetic Drosophila/genetics Drosophila Proteins/genetics Genes, Insect Genome, Insect Genomics Vocabulary, Controlled
Chemicals
Drosophila Proteins
Authors & Affiliations
12 authors, click to expand affiliations / ORCID
Tweedie Susan
Department of Genetics, University of Cambridge, Downing Street, Cambridge CB2 3EH, UK. s.tweedie@gen.cam.ac.uk
Ashburner Michael
Falls Kathleen
Leyland Paul
McQuilton Peter
Marygold Steven
Millburn Gillian
Osumi-Sutherland David
Schroeder Andrew
Seal Ruth
Zhang Haiyan
FlyBase Consortium
Investigators
32 investigators, click to expand
Gelbart W
Bitsoi L
Crosby M
Dirkmaat A
Emmert D
Gramates L S
Falls K
Kulathinal R
Matthews B
Roark M
Russo S
Schroeder A
St Pierre S
Zhang H
Zhou P
Zytkovicz M
Ashburner M
Brown N
Leyland P
McQuilton P
Marygold S
Millburn G
Osumi-Sutherlan D
Stefancsik R
Tweedie S
Williams M
Kaufman T
Matthews K
Goodman J
Grumbling G
Strelets V
Wilson R
References (8)
8 references, click to expand
  1. Gene ontology: tool for the unification of biology. The Gene Ontology Consortium.
    Nat Genet. 2000 May;25(1):25-9 PMID: 10802651
  2. An evaluation of GO annotation retrieval for BioCreAtIvE and GOA.
    BMC Bioinformatics. 2005;6 Suppl 1:S17 PMID: 15960829
  3. FlyBase: genomes by the dozen.
    Nucleic Acids Res. 2007 Jan;35(Database issue):D486-91 PMID: 17099233
  4. New developments in the InterPro database.
    Nucleic Acids Res. 2007 Jan;35(Database issue):D224-8 PMID: 17202162
  5. Evolution of genes and genomes on the Drosophila phylogeny.
    Nature. 2007 Nov 8;450(7167):203-18 PMID: 17994087
  6. The Gene Ontology project in 2008.
    Nucleic Acids Res. 2008 Jan;36(Database issue):D440-4 PMID: 17984083
  7. FlyBase: integration and improvements to query tools.
    Nucleic Acids Res. 2008 Jan;36(Database issue):D588-93 PMID: 18160408
  8. UniProtKB/Swiss-Prot.
    Methods Mol Biol. 2007;406:89-112 PMID: 18287689
Article Info
Journal
Nucleic acids research
Abbr.
Nucleic Acids Res
ISSN
1362-4962
Published
2009-01-00
Epub
2008-00-23
Pages
D555-9
Language
English
Region
England
NLM ID
0411011
PMCID
PMC2686450
Subset
IM
Grants
Medical Research Council · G8225539 · United Kingdom
NIGMS NIH HHS · R25 GM060201 · United States
Medical Research Council · G0500293 · United Kingdom
NHGRI NIH HHS · P41 HG00739 · United States
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