Home LiteratureArticle Details
PMID: 18500337 Published · ppublish English Journal Article Research Support, N.I.H., Extramural

Targeted gene inactivation in zebrafish using engineered zinc-finger nucleases.

Nature biotechnology ·Vol. 26 ·No. 6 ·2008-06-00 ·Pages 695-701

Meng X, Noyes MB, Zhu LJ, Lawson ND, Wolfe SA

Abstract

Direct genomic manipulation at a specific locus is still not feasible in most vertebrate model organisms. In vertebrate cell lines, genomic lesions at a specific site have been introduced using zinc-finger nucleases (ZFNs). Here we adapt this technology to create targeted mutations in the zebrafish germ line. ZFNs were engineered that recognize sequences in the zebrafish ortholog of the vascular endothelial growth factor-2 receptor, kdr (also known as kdra). Co-injection of mRNAs encoding these ZFNs into one-cell-stage zebrafish embryos led to mutagenic lesions at the target site that were transmitted through the germ line with high frequency. The use of engineered ZFNs to introduce heritable mutations into a genome obviates the need for embryonic stem cell lines and should be applicable to most animal species for which early-stage embryos are easily accessible.

MeSH Terms
Animals Animals, Genetically Modified/physiology Deoxyribonucleases/genetics Gene Silencing Gene Targeting/methods Genetic Engineering/methods Mutagenesis, Site-Directed/methods Protein Engineering/methods Zebrafish/genetics Zebrafish Proteins/genetics Zinc Fingers/genetics
Chemicals
Zebrafish Proteins Deoxyribonucleases
Authors & Affiliations
5 authors, click to expand affiliations / ORCID
Meng Xiangdong
Program in Gene Function and Expression, University of Massachusetts Medical School, Lazare Research Building, 6th Floor, 364 Plantation St., Worcester, Massachusetts 01605, USA.
Noyes Marcus B
Zhu Lihua J
Lawson Nathan D
Wolfe Scot A
References (31)
31 references, click to expand
  1. Gene targeting using zinc finger nucleases.
    Nat Biotechnol. 2005 Aug;23(8):967-73 PMID: 16082368
  2. An improved zinc-finger nuclease architecture for highly specific genome editing.
    Nat Biotechnol. 2007 Jul;25(7):778-85 PMID: 17603475
  3. Microinjection into zebrafish embryos.
    Methods Mol Biol. 1999;127:125-32 PMID: 10503230
  4. Expression of achaete-scute homolog 3 in Xenopus embryos converts ectodermal cells to a neural fate.
    Genes Dev. 1994 Jun 15;8(12):1434-47 PMID: 7926743
  5. In vivo imaging of embryonic vascular development using transgenic zebrafish.
    Dev Biol. 2002 Aug 15;248(2):307-18 PMID: 12167406
  6. Germ-line transmission of a disrupted beta 2-microglobulin gene produced by homologous recombination in embryonic stem cells.
    Nature. 1989 Nov 23;342(6248):435-8 PMID: 2685607
  7. Hybrid restriction enzymes: zinc finger fusions to Fok I cleavage domain.
    Proc Natl Acad Sci U S A. 1996 Feb 6;93(3):1156-60 PMID: 8577732
  8. Mutation detection using Surveyor nuclease.
    Biotechniques. 2004 Apr;36(4):702-7 PMID: 15088388
  9. Targeted chromosomal cleavage and mutagenesis in Drosophila using zinc-finger nucleases.
    Genetics. 2002 Jul;161(3):1169-75 PMID: 12136019
  10. Design, construction and in vitro testing of zinc finger nucleases.
    Nat Protoc. 2006;1(3):1329-41 PMID: 17406419
  11. Zinc Finger Tools: custom DNA-binding domains for transcription factors and nucleases.
    Nucleic Acids Res. 2006 Jul 1;34(Web Server issue):W516-23 PMID: 16845061
  12. DNA-binding specificity is a major determinant of the activity and toxicity of zinc-finger nucleases.
    Mol Ther. 2008 Feb;16(2):352-8 PMID: 18026168
  13. High-frequency homologous recombination in plants mediated by zinc-finger nucleases.
    Plant J. 2005 Nov;44(4):693-705 PMID: 16262717
  14. Highly efficient endogenous human gene correction using designed zinc-finger nucleases.
    Nature. 2005 Jun 2;435(7042):646-51 PMID: 15806097
  15. Standardized reagents and protocols for engineering zinc finger nucleases by modular assembly.
    Nat Protoc. 2006;1(3):1637-52 PMID: 17406455
  16. Targeted mutagenesis using zinc-finger nucleases in Arabidopsis.
    Proc Natl Acad Sci U S A. 2005 Feb 8;102(6):2232-7 PMID: 15677315
  17. Fitting a mixture model by expectation maximization to discover motifs in biopolymers.
    Proc Int Conf Intell Syst Mol Biol. 1994;2:28-36 PMID: 7584402
  18. Enhancing gene targeting with designed zinc finger nucleases.
    Science. 2003 May 2;300(5620):764 PMID: 12730594
  19. Inactivating the beta 2-microglobulin locus in mouse embryonic stem cells by homologous recombination.
    Proc Natl Acad Sci U S A. 1989 Nov;86(22):8932-5 PMID: 2682666
  20. Structure-based redesign of the dimerization interface reduces the toxicity of zinc-finger nucleases.
    Nat Biotechnol. 2007 Jul;25(7):786-93 PMID: 17603476
  21. WebLogo: a sequence logo generator.
    Genome Res. 2004 Jun;14(6):1188-90 PMID: 15173120
  22. Highly specific zinc finger proteins obtained by directed domain shuffling and cell-based selection.
    Proc Natl Acad Sci U S A. 2003 Oct 14;100(21):12271-6 PMID: 14527993
  23. Efficient gene targeting in Drosophila with zinc-finger nucleases.
    Genetics. 2006 Apr;172(4):2391-403 PMID: 16452139
  24. A systematic characterization of factors that regulate Drosophila segmentation via a bacterial one-hybrid system.
    Nucleic Acids Res. 2008 May;36(8):2547-60 PMID: 18332042
  25. Sequence logos: a new way to display consensus sequences.
    Nucleic Acids Res. 1990 Oct 25;18(20):6097-100 PMID: 2172928
  26. Validated zinc finger protein designs for all 16 GNN DNA triplet targets.
    J Biol Chem. 2002 Feb 8;277(6):3850-6 PMID: 11726671
  27. Identifying DNA sequences recognized by a transcription factor using a bacterial one-hybrid system.
    Nat Protoc. 2006;1(1):30-45 PMID: 17406209
  28. Stimulation of homologous recombination through targeted cleavage by chimeric nucleases.
    Mol Cell Biol. 2001 Jan;21(1):289-97 PMID: 11113203
  29. Distinct genetic interactions between multiple Vegf receptors are required for development of different blood vessel types in zebrafish.
    Proc Natl Acad Sci U S A. 2006 Apr 25;103(17):6554-9 PMID: 16617120
  30. Chimeric nucleases stimulate gene targeting in human cells.
    Science. 2003 May 2;300(5620):763 PMID: 12730593
  31. Custom zinc-finger nucleases for use in human cells.
    Mol Ther. 2005 Oct;12(4):610-7 PMID: 16039907
Article Info
Journal
Nature biotechnology
Abbr.
Nat Biotechnol
ISSN
1546-1696
Published
2008-06-00
Epub
2008-00-25
Pages
695-701
Language
English
Region
United States
NLM ID
9604648
PMCID
PMC2502069
Subset
IM
Grants
NHLBI NIH HHS · R01 HL079266-05 · United States
NIGMS NIH HHS · R01 GM068110 · United States
NHLBI NIH HHS · R01HL079266 · United States
NIGMS NIH HHS · R01 GM068110-05 · United States
NIGMS NIH HHS · 1R01GM068110 · United States
NHLBI NIH HHS · R01 HL079266 · United States
Corrections
CommentIn
Analysis Services
Analysis Services

Contact

No. 2 Wenbo Road, Zhangqiu District, Jinan, Shandong

Qilu Normal University · Genelibs Bioinformatics Lab

750 Shunhua Rd, Jinan

2F, Bldg F, University Science Park

Tel: 0531-88819269

WeChat Official Account

Follow our WeChat subscription account for real-time updates and the latest in medical and biological research.


Business Email

E-mail: product@genelibs.com