Home LiteratureArticle Details
PMID: 1847513 Published · ppublish English Journal Article Research Support, Non-U.S. Gov't Research Support, U.S. Gov't, Non-P.H.S. Research Support, U.S. Gov't, P.H.S.

Transposon-facilitated DNA sequencing.

Strathmann M, Hamilton BA, Mayeda CA, Simon MI, Meyerowitz EM, Palazzolo MJ

Abstract

We describe here a transposon-based DNA sequencing strategy that allows the introduction of sequencing priming sites throughout a target sequence by bacterial mating. A miniplasmid was designed to select against transposon insertions into the vector. Sites of transposon insertion are mapped by the polymerase chain reaction with bacterial overnight cultures providing the templates. A small set of plasmids with transposons spaced several hundred base pairs apart can then be sequenced. Sequencing primers corresponding to the transposon ends allow sequencing in both directions. Thus, the entire sequence of both strands can be easily determined.

MeSH Terms
Base Sequence Crosses, Genetic DNA/genetics DNA Transposable Elements Escherichia coli/genetics Genetic Vectors Molecular Sequence Data Mutagenesis, Insertional/methods Oligonucleotide Probes Polymerase Chain Reaction/methods Restriction Mapping
Chemicals
DNA Transposable Elements Oligonucleotide Probes DNA
Authors & Affiliations
6 authors, click to expand affiliations / ORCID
Strathmann M
California Institute of Technology, Division of Biology, Pasadena 91125.
Hamilton B A
Mayeda C A
Simon M I
Meyerowitz E M
Palazzolo M J
References (17)
17 references, click to expand
  1. Enzymatic amplification of beta-globin genomic sequences and restriction site analysis for diagnosis of sickle cell anemia.
    Science. 1985 Dec 20;230(4732):1350-4 PMID: 2999980
  2. The gamma delta sequence of F is an insertion sequence.
    J Mol Biol. 1978 Dec 15;126(3):347-65 PMID: 745233
  3. Bidirectional chain-termination nucleotide sequencing: transposon Tn5seq1 as a mobile source of primer sites.
    Gene. 1988 Apr 15;64(1):135-45 PMID: 2840345
  4. Specific-primer-directed DNA sequencing.
    Anal Biochem. 1986 Apr;154(1):353-60 PMID: 3010776
  5. A rapid procedure for DNA sequencing using transposon-promoted deletions in Escherichia coli.
    Gene. 1985;39(2-3):305-10 PMID: 3005115
  6. Rapid sequencing of cloned DNA using a transposon for bidirectional priming: sequence of the Escherichia coli K-12 avtA gene.
    Nucleic Acids Res. 1987 Nov 25;15(22):9461-9 PMID: 2825136
  7. DNA sequence of the E. coli gyrB gene: application of a new sequencing strategy.
    Nucleic Acids Res. 1987 Jan 26;15(2):771-84 PMID: 3029692
  8. Use of a new strategy to isolate and characterize 436 Drosophila cDNA clones corresponding to RNAs detected in adult heads but not in early embryos.
    Neuron. 1989 Oct;3(4):527-39 PMID: 2484341
  9. Probe mapping to facilitate transposon-based DNA sequencing.
    Proc Natl Acad Sci U S A. 1990 Aug;87(16):6213-7 PMID: 2166950
  10. Uses of the transposon gamma delta in the analysis of cloned genes.
    Methods Enzymol. 1983;101:362-9 PMID: 6310336
  11. New M13 vectors for cloning.
    Methods Enzymol. 1983;101:20-78 PMID: 6310323
  12. Conduction of nonconjugative plasmids by F' lac is not necessarily associated with transposition of the gamma delta sequence.
    J Bacteriol. 1984 Aug;159(2):590-6 PMID: 6086578
  13. A rapid boiling method for the preparation of bacterial plasmids.
    Anal Biochem. 1981 Jun;114(1):193-7 PMID: 6269464
  14. Unidirectional digestion with exonuclease III creates targeted breakpoints for DNA sequencing.
    Gene. 1984 Jun;28(3):351-9 PMID: 6235151
  15. Analysis of gene control signals by DNA fusion and cloning in Escherichia coli.
    J Mol Biol. 1980 Apr;138(2):179-207 PMID: 6997493
  16. Complete nucleotide sequence of the Escherichia coli plasmid pBR322.
    Cold Spring Harb Symp Quant Biol. 1979;43 Pt 1:77-90 PMID: 383387
  17. Using transposon Tn5 insertions to sequence bacteriophage T4 gene 11.
    DNA. 1989 May;8(4):287-95 PMID: 2548819
Article Info
Journal
Proceedings of the National Academy of Sciences of the United States of America
Abbr.
Proc Natl Acad Sci U S A
ISSN
0027-8424
Published
1991-02-15
Pages
1247-50
Language
English
Region
United States
NLM ID
7505876
PMCID
PMC50994
Subset
IM
Grants
NIGMS NIH HHS · GM40499 · United States
NIGMS NIH HHS · T32 GM07616 · United States
Analysis Services
Analysis Services

Contact

No. 2 Wenbo Road, Zhangqiu District, Jinan, Shandong

Qilu Normal University · Genelibs Bioinformatics Lab

750 Shunhua Rd, Jinan

2F, Bldg F, University Science Park

Tel: 0531-88819269

WeChat Official Account

Follow our WeChat subscription account for real-time updates and the latest in medical and biological research.


Business Email

E-mail: product@genelibs.com