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PMID: 18428421 Published · ppublish English Journal Article

The Catalogue of Somatic Mutations in Cancer (COSMIC).

Current protocols in human genetics ·Vol. Chapter 10 ·2008-04-00 ·Pages Unit 10.11

Forbes SA, Bhamra G, Bamford S, Dawson E, Kok C, Clements J, Menzies A, Teague JW, Futreal PA, Stratton MR

Abstract

COSMIC is currently the most comprehensive global resource for information on somatic mutations in human cancer, combining curation of the scientific literature with tumor resequencing data from the Cancer Genome Project at the Sanger Institute, U.K. Almost 4800 genes and 250000 tumors have been examined, resulting in over 50000 mutations available for investigation. This information can be accessed in a number of ways, the most convenient being the Web-based system which allows detailed data mining, presenting the results in easily interpretable formats. This unit describes the graphical system in detail, elaborating an example walkthrough and the many ways that the resulting information can be thoroughly investigated by combining data, respecializing the query, or viewing the results in different ways. Alternate protocols overview the available precompiled data files available for download.

MeSH Terms
Catalogs as Topic Computer Graphics Databases, Genetic Genetics, Medical Humans Internet Mutation Neoplasms/classification,genetics Oncogenes Phenotype
Authors & Affiliations
10 authors, click to expand affiliations / ORCID
Forbes S A
Wellcome Trust Genome Campus, Hinxton, United Kingdom.
Bhamra G
Bamford S
Dawson E
Kok C
Clements J
Menzies A
Teague J W
Futreal P A
Stratton M R
References (10)
10 references, click to expand
  1. A census of human cancer genes.
    Nat Rev Cancer. 2004 Mar;4(3):177-83 PMID: 14993899
  2. The Ras-RasGAP complex: structural basis for GTPase activation and its loss in oncogenic Ras mutants.
    Science. 1997 Jul 18;277(5324):333-8 PMID: 9219684
  3. Mutation nomenclature extensions and suggestions to describe complex mutations: a discussion.
    Hum Mutat. 2000;15(1):7-12 PMID: 10612815
  4. Tobacco smoke carcinogens, DNA damage and p53 mutations in smoking-associated cancers.
    Oncogene. 2002 Oct 21;21(48):7435-51 PMID: 12379884
  5. Mutagenesis of the N-(deoxyguanosin-8-yl)-2-amino-1-methyl-6-phenylimidazo[4, 5-b]pyridine DNA adduct in mammalian cells. Sequence context effects.
    J Biol Chem. 1999 Sep 24;274(39):27433-8 PMID: 10488075
  6. Recurrent KRAS codon 146 mutations in human colorectal cancer.
    Cancer Biol Ther. 2006 Aug;5(8):928-32 PMID: 16969076
  7. Online Mendelian Inheritance in Man (OMIM), a knowledgebase of human genes and genetic disorders.
    Nucleic Acids Res. 2002 Jan 1;30(1):52-5 PMID: 11752252
  8. Molecular characterisation of pancreatic ductal adenocarcinoma in patients under 40.
    J Clin Pathol. 2006 Jun;59(6):580-4 PMID: 16497872
  9. Pten, a protean tumor suppressor.
    Am J Pathol. 2001 Jun;158(6):1895-8 PMID: 11395362
  10. Impact of mutant p53 functional properties on TP53 mutation patterns and tumor phenotype: lessons from recent developments in the IARC TP53 database.
    Hum Mutat. 2007 Jun;28(6):622-9 PMID: 17311302
Article Info
Journal
Current protocols in human genetics
Abbr.
Curr Protoc Hum Genet
ISSN
1934-8258
Published
2008-04-00
Pages
Unit 10.11
Language
English
Region
United States
NLM ID
101287858
PMCID
PMC2705836
Subset
IM
Grants
Wellcome Trust · 077012 · United Kingdom
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