Home LiteratureArticle Details
PMID: 1831267 Published · ppublish English Journal Article

A constant rate of spontaneous mutation in DNA-based microbes.

Drake JW

Abstract

In terms of evolution and fitness, the most significant spontaneous mutation rate is likely to be that for the entire genome (or its nonfrivolous fraction). Information is now available to calculate this rate for several DNA-based haploid microbes, including bacteriophages with single- or double-stranded DNA, a bacterium, a yeast, and a filamentous fungus. Their genome sizes vary by approximately 6500-fold. Their average mutation rates per base pair vary by approximately 16,000-fold, whereas their mutation rates per genome vary by only approximately 2.5-fold, apparently randomly, around a mean value of 0.0033 per DNA replication. The average mutation rate per base pair is inversely proportional to genome size. Therefore, a nearly invariant microbial mutation rate appears to have evolved. Because this rate is uniform in such diverse organisms, it is likely to be determined by deep general forces, perhaps by a balance between the usually deleterious effects of mutation and the physiological costs of further reducing mutation rates.

MeSH Terms
Bacteriophage lambda/genetics Base Composition Biological Evolution Coliphages/genetics DNA, Bacterial/genetics DNA, Fungal/genetics DNA, Viral/genetics Escherichia coli/genetics Genes, Bacterial Genes, Fungal Genes, Viral Mutation Neurospora crassa/genetics Saccharomyces cerevisiae/genetics Species Specificity T-Phages/genetics
Chemicals
DNA, Bacterial DNA, Fungal DNA, Viral
Authors & Affiliations
1 authors, click to expand affiliations / ORCID
Drake J W
Laboratory of Molecular Genetics, National Institute of Environmental Health Sciences, Research Triangle Park, NC 27709.
References (49)
49 references, click to expand
  1. The rIIA gene of bacteriophage T4. I. Its DNA sequence and discovery of a new open reading frame between genes 60 and rIIA.
    Genetics. 1990 Jun;125(2):237-48 PMID: 2379817
  2. Specificity of the mutator effect caused by disruption of the RAD1 excision repair gene of Saccharomyces cerevisiae.
    J Bacteriol. 1990 Jun;172(6):3009-14 PMID: 2160935
  3. rII cistrons of bacteriophage T4. DNA sequence around the intercistronic divide and positions of genetic landmarks.
    J Mol Biol. 1981 Jul 5;149(3):337-76 PMID: 6273585
  4. Nucleotide sequence of bacteriophage lambda DNA.
    J Mol Biol. 1982 Dec 25;162(4):729-73 PMID: 6221115
  5. DNA base sequence changes induced by bromouracil mutagenesis of lambda phage.
    J Mol Biol. 1982 Jul 25;159(1):19-33 PMID: 6215499
  6. Nucleotide sequence of the filamentous bacteriophage M13 DNA genome: comparison with phage fd.
    Gene. 1980 Oct;11(1-2):129-48 PMID: 6254849
  7. Frequency of fixation of adaptive mutations is higher in evolving diploid than haploid yeast populations.
    Nature. 1983 Apr 7;302(5908):495-500 PMID: 6339947
  8. Modulation of mutation rates in bacteriophage T4 by a base-pair change a dozen nucleotides removed.
    J Mol Biol. 1984 Jun 25;176(2):239-49 PMID: 6748077
  9. Yeast ribosomal DNA genes are located on chromosome XII.
    Proc Natl Acad Sci U S A. 1979 Jan;76(1):410-4 PMID: 370829
  10. The CAN1 locus of Saccharomyces cerevisiae: fine-structure analysis and forward mutation rates.
    Genetics. 1979 Jan;91(1):35-51 PMID: 372045
  11. Sequence of the lacI gene.
    Nature. 1978 Aug 24;274(5673):765-9 PMID: 355891
  12. DNA sequence of the bacteriophage gama cI gene.
    Nature. 1978 Nov 16;276(5685):301-2 PMID: 714163
  13. Mutators in Saccharomyces cerevisiae: MUT1-1, MUT1-2 and MUT2-1.
    Genetics. 1976 Aug;83(4):655-66 PMID: 786780
  14. Electron microscope heteroduplex study of sequence relations of T2, T4, and T6 bacteriophage DNAs.
    Virology. 1974 Jan;57(1):93-111 PMID: 4594471
  15. Mutagenic effects of thymine dimers in bacteriophage T4.
    J Mol Biol. 1972 Apr 28;66(1):107-14 PMID: 4557194
  16. Genetic control of mutation rates in bacteriophageT4.
    Nature. 1969 Mar 22;221(5186):1128-32 PMID: 4975273
  17. The adaptive responses of Escherichia coli to a feast and famine existence.
    Adv Microb Physiol. 1971;6:147-217 PMID: 4950180
  18. Classification and mapping of spontaneous and induced mutations in the histidine operon of Salmonella.
    Adv Genet. 1971;16:1-34 PMID: 4947105
  19. Cryptic mutants of bacteriophage T4.
    Genetics. 1970 Jul;65(3):379-90 PMID: 4933467
  20. Mutagen specificity and position effects on mutation in T4rII nonsense sites.
    Mutat Res. 1976 Jan;34(1):21-34 PMID: 1250247
  21. Ultraviolet mutagenesis in bacteriophage T4. II. Photoreversal of mutational lesions.
    J Bacteriol. 1966 Jul;92(1):144-7 PMID: 5941273
  22. Ultraviolet mutagenesis in bacteriophage T-4. I. Irradiation of extracellular phage particles.
    J Bacteriol. 1966 May;91(5):1775-80 PMID: 5937237
  23. Forward and Reverse Mutation in a Histidine-Requiring Strain of Escherichia Coli.
    Genetics. 1951 Sep;36(5):460-77 PMID: 17247359
  24. Mutations of Bacteria from Virus Sensitivity to Virus Resistance.
    Genetics. 1943 Nov;28(6):491-511 PMID: 17247100
  25. MUTAGENIC ACTION DURING MEIOSIS AND ANTIMUTAGENIC ACTION DURING MITOSIS BY 5-AMINOACRIDINE IN YEAST.
    Mutat Res. 1964 Oct;106:227-30 PMID: 14234972
  26. [Defective lysogenic bacteria. II. Physiological types resulting from prophage mutations].
    Ann Inst Pasteur (Paris). 1957 Dec;93(6):724-53 PMID: 13498456
  27. The frequency distribution of spontaneous bacteriophage mutants as evidence for the exponential rate of phage reproduction.
    Cold Spring Harb Symp Quant Biol. 1951;16:463-70 PMID: 14942756
  28. Spontaneous point mutations that occur more often when advantageous than when neutral.
    Genetics. 1990 Sep;126(1):5-16 PMID: 2227388
  29. Sequence and structure of mtr, an amino acid transport gene of Neurospora crassa.
    Genome. 1991 Aug;34(4):644-51 PMID: 1838345
  30. Analysis of yeast retrotransposon Ty insertions at the CAN1 locus.
    Genetics. 1989 Dec;123(4):655-65 PMID: 2558956
  31. Mechanisms of spontaneous mutagenesis: an analysis of the spectrum of spontaneous mutation in the Escherichia coli lacI gene.
    J Mol Biol. 1986 May 20;189(2):273-84 PMID: 3018259
  32. The base substitution fidelity of eucaryotic DNA polymerases. Mispairing frequencies, site preferences, insertion preferences, and base substitution by dislocation.
    J Biol Chem. 1986 Jan 5;261(1):160-6 PMID: 3941068
  33. The 52-protein subunit of T4 DNA topoisomerase is homologous to the gyrA-protein of gyrase.
    Nucleic Acids Res. 1986 Sep 25;14(18):7379-90 PMID: 3020513
  34. Molecular cloning of chromosome I DNA from Saccharomyces cerevisiae: isolation and analysis of the CEN1-ADE1-CDC15 region.
    Mol Cell Biol. 1987 Jan;7(1):410-9 PMID: 3031471
  35. An electrophoretic karyotype of Neurospora crassa.
    Mol Cell Biol. 1988 Apr;8(4):1469-73 PMID: 2967910
  36. Changes in DNA base sequence induced by gamma-ray mutagenesis of lambda phage and prophage.
    Genetics. 1988 Apr;118(4):551-60 PMID: 2966755
  37. Evolution in bacteria: evidence for a universal substitution rate in cellular genomes.
    J Mol Evol. 1987;26(1-2):74-86 PMID: 3125340
  38. The base-alteration spectrum of spontaneous and ultraviolet radiation-induced forward mutations in the URA3 locus of Saccharomyces cerevisiae.
    Mol Gen Genet. 1988 Nov;214(3):396-404 PMID: 3063945
  39. Structure and function of the Salmonella typhimurium and Escherichia coli K-12 histidine operons.
    J Mol Biol. 1988 Oct 5;203(3):585-606 PMID: 3062174
  40. The origin of mutants.
    Nature. 1988 Sep 8;335(6186):142-5 PMID: 3045565
  41. Genetic map of Saccharomyces cerevisiae, edition 10.
    Yeast. 1989 Sep-Oct;5(5):321-403 PMID: 2678811
  42. Structure and function of the yeast URA3 gene: expression in Escherichia coli.
    Gene. 1984 Jul-Aug;29(1-2):113-24 PMID: 6092217
  43. Yeast arginine permease: nucleotide sequence of the CAN1 gene.
    Curr Genet. 1986;10(8):587-92 PMID: 3327612
  44. A physical map of the Escherichia coli K12 genome.
    Science. 1987 Jun 12;236(4807):1448-53 PMID: 3296194
  45. Molecular cloning of chromosome I DNA from Saccharomyces cerevisiae: isolation and characterization of the CDC24 gene and adjacent regions of the chromosome.
    Mol Cell Biol. 1986 Dec;6(12):4516-25 PMID: 3540615
  46. Sequences and studies of bacteriophage T4 rII mutants.
    J Mol Biol. 1987 Jun 5;195(3):471-80 PMID: 3656422
  47. Molecular characterization of the CAN1 locus in Saccharomyces cerevisiae. A transmembrane protein without N-terminal hydrophobic signal sequence.
    J Biol Chem. 1985 Sep 25;260(21):11831-7 PMID: 3900064
  48. The mutational specificity of DNA polymerase-beta during in vitro DNA synthesis. Production of frameshift, base substitution, and deletion mutations.
    J Biol Chem. 1985 May 10;260(9):5787-96 PMID: 3988773
  49. A fine structure map of spontaneous and induced mutations in the lambda repressor gene, including insertions of IS elements.
    Mol Gen Genet. 1981;184(3):364-71 PMID: 6278251
Article Info
Journal
Proceedings of the National Academy of Sciences of the United States of America
Abbr.
Proc Natl Acad Sci U S A
ISSN
0027-8424
Published
1991-08-15
Pages
7160-4
Language
English
Region
United States
NLM ID
7505876
PMCID
PMC52253
Subset
IM
Analysis Services
Analysis Services

Contact

No. 2 Wenbo Road, Zhangqiu District, Jinan, Shandong

Qilu Normal University · Genelibs Bioinformatics Lab

750 Shunhua Rd, Jinan

2F, Bldg F, University Science Park

Tel: 0531-88819269

WeChat Official Account

Follow our WeChat subscription account for real-time updates and the latest in medical and biological research.


Business Email

E-mail: product@genelibs.com