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PMID: 18233493 Published · ppublish English Journal Article Research Support, Non-U.S. Gov't

DNA replication timing data corroborate in silico human replication origin predictions.

Physical review letters ·Vol. 99 ·No. 24 ·2007-12-14 ·Pages 248102

Audit B, Nicolay S, Huvet M, Touchon M, d'Aubenton-Carafa Y, Thermes C, Arneodo A

Abstract

We develop a wavelet-based multiscale pattern recognition methodology to disentangle the replication- from the transcription-associated compositional strand asymmetries observed in the human genome. Comparing replication skew profiles to recent high-resolution replication timing data reveals that most of the putative replication origins that border the so-identified replication domains are replicated earlier than their surroundings whereas the central regions replicate late in the S phase. We discuss the implications of this first experimental confirmation of these replication origin predictions that are likely to be early replicating and active in most tissues.

MeSH Terms
Animals DNA Replication Genome, Human Humans Models, Genetic Pattern Recognition, Automated/methods
Authors & Affiliations
7 authors, click to expand affiliations / ORCID
Audit B
Laboratoire Joliot-Curie, ENS-Lyon, CNRS, France.
Nicolay S
Huvet M
Touchon M
d'Aubenton-Carafa Y
Thermes C
Arneodo A
Article Info
Journal
Physical review letters
Abbr.
Phys Rev Lett
ISSN
0031-9007
Published
2007-12-14
Epub
2007-00-12
Pages
248102
Language
English
Region
United States
NLM ID
0401141
Subset
IM
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