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PMID: 18096909 Published · ppublish English Journal Article Research Support, N.I.H., Extramural Research Support, Non-U.S. Gov't Research Support, U.S. Gov't, Non-P.H.S.

caGrid 1.0: an enterprise Grid infrastructure for biomedical research.

Journal of the American Medical Informatics Association : JAMIA ·Vol. 15 ·No. 2 ·2008-00-00 ·Pages 138-49

Oster S, Langella S, Hastings S, Ervin D, Madduri R, Phillips J, Kurc T, Siebenlist F, Covitz P, Shanbhag K, Foster I, Saltz J

Abstract

To develop software infrastructure that will provide support for discovery, characterization, integrated access, and management of diverse and disparate collections of information sources, analysis methods, and applications in biomedical research. An enterprise Grid software infrastructure, called caGrid version 1.0 (caGrid 1.0), has been developed as the core Grid architecture of the NCI-sponsored cancer Biomedical Informatics Grid (caBIG) program. It is designed to support a wide range of use cases in basic, translational, and clinical research, including 1) discovery, 2) integrated and large-scale data analysis, and 3) coordinated study. The caGrid is built as a Grid software infrastructure and leverages Grid computing technologies and the Web Services Resource Framework standards. It provides a set of core services, toolkits for the development and deployment of new community provided services, and application programming interfaces for building client applications. The caGrid 1.0 was released to the caBIG community in December 2006. It is built on open source components and caGrid source code is publicly and freely available under a liberal open source license. The core software, associated tools, and documentation can be downloaded from the following URL: https://cabig.nci.nih.gov/workspaces/Architecture/caGrid. While caGrid 1.0 is designed to address use cases in cancer research, the requirements associated with discovery, analysis and integration of large scale data, and coordinated studies are common in other biomedical fields. In this respect, caGrid 1.0 is the realization of a framework that can benefit the entire biomedical community.

MeSH Terms
Biomedical Research/organization & administration Clinical Trials as Topic Computational Biology/methods Computer Security Computer Systems Database Management Systems Humans Information Storage and Retrieval Internet National Cancer Institute (U.S.) Neoplasms Software Systems Integration United States
Authors & Affiliations
12 authors, click to expand affiliations / ORCID
Oster Scott
Biomedical Informatics Department, Ohio State University, Columbus, OH 43210, USA.
Langella Stephen
Hastings Shannon
Ervin David
Madduri Ravi
Phillips Joshua
Kurc Tahsin
Siebenlist Frank
Covitz Peter
Shanbhag Krishnakant
Foster Ian
Saltz Joel
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9 references, click to expand
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Article Info
Journal
Journal of the American Medical Informatics Association : JAMIA
Abbr.
J Am Med Inform Assoc
ISSN
1067-5027
Published
2008-00-00
Epub
2007-00-20
Pages
138-49
Language
English
Region
England
NLM ID
9430800
PMCID
PMC2274794
Subset
IM
Grants
NHLBI NIH HHS · R01 HL105239 · United States
NLM NIH HHS · R01 LM009239 · United States
NIBIB NIH HHS · P20 EB000591 · United States
NHLBI NIH HHS · R24 HL085343 · United States
PHS HHS · 79077CBS10 · United States
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