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PMID: 18047641 Published · ppublish English Journal Article Research Support, Non-U.S. Gov't

Application of phage display to high throughput antibody generation and characterization.

Genome biology ·Vol. 8 ·No. 11 ·2007-00-00 ·Pages R254

Schofield DJ, Pope AR, Clementel V, Buckell J, Chapple SDj, Clarke KF, Conquer JS, Crofts AM, Crowther SR, Dyson MR, Flack G, Griffin GJ, Hooks Y, Howat WJ, Kolb-Kokocinski A, Kunze S, Martin CD, Maslen GL, Mitchell JN, O'Sullivan M, Perera RL, Roake W, Shadbolt SP, Vincent KJ, Warford A, Wilson WE, Xie J, Young JL, McCafferty J

Abstract

We have created a high quality phage display library containing over 1010 human antibodies and describe its use in the generation of antibodies on an unprecedented scale. We have selected, screened and sequenced over 38,000 recombinant antibodies to 292 antigens, yielding over 7,200 unique clones. 4,400 antibodies were characterized by specificity testing and detailed sequence analysis and the data/clones are available online. Sensitive detection was demonstrated in a bead based flow cytometry assay. Furthermore, positive staining by immunohistochemistry on tissue microarrays was found for 37% (143/381) of antibodies. Thus, we have demonstrated the potential of and illuminated the issues associated with genome-wide monoclonal antibody generation.

MeSH Terms
Animals Antibody Formation Antibody Specificity Bacteriophages/genetics Base Sequence DNA Primers Enzyme-Linked Immunosorbent Assay Flow Cytometry Gene Expression Profiling Humans Immunohistochemistry In Situ Hybridization Mice Recombinant Proteins/biosynthesis,genetics,immunology
Chemicals
DNA Primers Recombinant Proteins
Authors & Affiliations
29 authors, click to expand affiliations / ORCID
Schofield Darren J
Abcam Ltd, Cambridge Science Park, Cambridge CB4 0FW, UK. Darren.Schofield@abcam.com
Pope Anthony R
Clementel Veronica
Buckell Jenny
Chapple Susan Dj
Clarke Kay F
Conquer Jennie S
Crofts Anna M
Crowther Sandra R E
Dyson Michael R
Flack Gillian
Griffin Gareth J
Hooks Yvette
Howat William J
Kolb-Kokocinski Anja
Kunze Susan
Martin Cecile D
Maslen Gareth L
Mitchell Joanne N
O'Sullivan Maureen
Perera Rajika L
Roake Wendy
Shadbolt S Paul
Vincent Karen J
Warford Anthony
Wilson Wendy E
Xie Jane
Young Joyce L
McCafferty John
References (38)
38 references, click to expand
  1. p75 and Trk: a two-receptor system.
    Trends Neurosci. 1995 Jul;18(7):321-6 PMID: 7571013
  2. The extracellular domain of the human erythropoietin receptor: expression as a fusion protein in Escherichia coli, purification, and biological properties.
    Prep Biochem Biotechnol. 1999 May;29(2):163-76 PMID: 10231895
  3. Notch promotes neural lineage entry by pluripotent embryonic stem cells.
    PLoS Biol. 2006 May;4(5):e121 PMID: 16594731
  4. Expression of immunoglobulin and scavenger receptor superfamily domains as chimeric proteins with domains 3 and 4 of CD4 for ligand analysis.
    Protein Eng. 1994 Apr;7(4):515-21 PMID: 7518084
  5. By-passing immunization. Human antibodies from V-gene libraries displayed on phage.
    J Mol Biol. 1991 Dec 5;222(3):581-97 PMID: 1748994
  6. A simple vector system to improve performance and utilisation of recombinant antibodies.
    BMC Biotechnol. 2006 Dec 07;6:46 PMID: 17156422
  7. Proteolytic selection for protein folding using filamentous bacteriophages.
    Fold Des. 1998;3(5):321-8 PMID: 9806934
  8. Production of soluble mammalian proteins in Escherichia coli: identification of protein features that correlate with successful expression.
    BMC Biotechnol. 2004 Dec 14;4:32 PMID: 15598350
  9. Measurements of the true affinity constant in solution of antigen-antibody complexes by enzyme-linked immunosorbent assay.
    J Immunol Methods. 1985 Mar 18;77(2):305-19 PMID: 3981007
  10. Conversion of embryonic stem cells into neuroectodermal precursors in adherent monoculture.
    Nat Biotechnol. 2003 Feb;21(2):183-6 PMID: 12524553
  11. DNA cloning using in vitro site-specific recombination.
    Genome Res. 2000 Nov;10(11):1788-95 PMID: 11076863
  12. Molecular basis for the binding promiscuity of an anti-p24 (HIV-1) monoclonal antibody.
    Cell. 1997 Dec 12;91(6):799-809 PMID: 9413989
  13. Escherichia coli maltose-binding protein as a molecular chaperone for recombinant intracellular cytoplasmic single-chain antibodies.
    J Mol Biol. 2001 Sep 7;312(1):79-93 PMID: 11545587
  14. A reagent resource to identify proteins and peptides of interest for the cancer community: a workshop report.
    Mol Cell Proteomics. 2006 Oct;5(10):1996-2007 PMID: 16867976
  15. Isolation and tissue profiles of a large panel of phage antibodies binding to the human adipocyte cell surface.
    J Immunol Methods. 2000 Nov 1;245(1-2):67-78 PMID: 11042284
  16. ProteomeBinders: planning a European resource of affinity reagents for analysis of the human proteome.
    Nat Methods. 2007 Jan;4(1):13-7 PMID: 17195019
  17. Mouse protein arrays from a TH1 cell cDNA library for antibody screening and serum profiling.
    Genomics. 2005 Mar;85(3):285-96 PMID: 15718096
  18. Primer3 on the WWW for general users and for biologist programmers.
    Methods Mol Biol. 2000;132:365-86 PMID: 10547847
  19. Escherichia coli maltose-binding protein is uncommonly effective at promoting the solubility of polypeptides to which it is fused.
    Protein Sci. 1999 Aug;8(8):1668-74 PMID: 10452611
  20. Multi-subunit proteins on the surface of filamentous phage: methodologies for displaying antibody (Fab) heavy and light chains.
    Nucleic Acids Res. 1991 Aug 11;19(15):4133-7 PMID: 1908075
  21. Accelerated screening of phage-display output with alkaline phosphatase fusions.
    Comb Chem High Throughput Screen. 2004 Feb;7(1):55-62 PMID: 14965261
  22. Tissue microarrays for high-throughput molecular profiling of tumor specimens.
    Nat Med. 1998 Jul;4(7):844-7 PMID: 9662379
  23. High-level and high-throughput recombinant protein production by transient transfection of suspension-growing human 293-EBNA1 cells.
    Nucleic Acids Res. 2002 Jan 15;30(2):E9 PMID: 11788735
  24. A human protein atlas for normal and cancer tissues based on antibody proteomics.
    Mol Cell Proteomics. 2005 Dec;4(12):1920-32 PMID: 16127175
  25. Selection of large diversities of antiidiotypic antibody fragments by phage display.
    J Mol Biol. 2002 Feb 1;315(5):1087-97 PMID: 11827478
  26. A rapid immunohistochemical primary screening assay for hybridomas.
    J Immunol Methods. 2003 Jan 15;272(1-2):49-53 PMID: 12505711
  27. Assessing the potential of immunohistochemistry for systematic gene expression profiling.
    J Immunol Methods. 2007 Jan 10;318(1-2):125-37 PMID: 17141799
  28. Multiplexed expression and screening for recombinant protein production in mammalian cells.
    BMC Biotechnol. 2006 Dec 22;6:49 PMID: 17187663
  29. Human antibodies with sub-nanomolar affinities isolated from a large non-immunized phage display library.
    Nat Biotechnol. 1996 Mar;14(3):309-14 PMID: 9630891
  30. A strategy for optimizing the monodispersity of fusion proteins: application to purification of recombinant HPV E6 oncoprotein.
    Protein Eng. 2001 Apr;14(4):297-305 PMID: 11391022
  31. Pfam: clans, web tools and services.
    Nucleic Acids Res. 2006 Jan 1;34(Database issue):D247-51 PMID: 16381856
  32. A nonredundant human protein chip for antibody screening and serum profiling.
    Mol Cell Proteomics. 2003 Dec;2(12):1342-9 PMID: 14517340
  33. Crystallographic analysis of anti-p24 (HIV-1) monoclonal antibody cross-reactivity and polyspecificity.
    Cell. 1997 Dec 12;91(6):811-20 PMID: 9413990
  34. Analyzing antibody specificity with whole proteome microarrays.
    Nat Biotechnol. 2003 Dec;21(12):1509-12 PMID: 14608365
  35. Structure-based improvement of the biophysical properties of immunoglobulin VH domains with a generalizable approach.
    Biochemistry. 2003 Feb 18;42(6):1517-28 PMID: 12578364
  36. Ensembl 2007.
    Nucleic Acids Res. 2007 Jan;35(Database issue):D610-7 PMID: 17148474
  37. Protein production by auto-induction in high density shaking cultures.
    Protein Expr Purif. 2005 May;41(1):207-34 PMID: 15915565
  38. Quality control in the endoplasmic reticulum.
    Nat Rev Mol Cell Biol. 2003 Mar;4(3):181-91 PMID: 12612637
Article Info
Journal
Genome biology
Abbr.
Genome Biol
ISSN
1474-760X
Published
2007-00-00
Pages
R254
Language
English
Region
England
NLM ID
100960660
PMCID
PMC2258204
Subset
IM
Grants
Wellcome Trust · United Kingdom
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