Home LiteratureArticle Details
PMID: 18042709 Published · ppublish English Journal Article Research Support, N.I.H., Extramural Research Support, Non-U.S. Gov't

Yeast gain-of-function mutations reveal structure-function relationships conserved among different subfamilies of transient receptor potential channels.

Su Z, Zhou X, Haynes WJ, Loukin SH, Anishkin A, Saimi Y, Kung C

Abstract

Transient receptor potential (TRP) channels found in animals, protists, and fungi are primary chemo-, thermo-, or mechanosensors. Current research emphasizes the characteristics of individual channels in each animal TRP subfamily but not the mechanisms common across subfamilies. A forward genetic screen of the TrpY1, the yeast TRP channel, recovered gain-of-function (GOF) mutations with phenotype in vivo and in vitro. Single-channel patch-clamp analyses of these GOF-mutant channels show prominent aberrations in open probability and channel kinetics. These mutations revealed functionally important aromatic amino acid residues in four locations: at the intracellular end of the fifth transmembrane helix (TM5), at both ends of TM6, and at the immediate extension of TM6. These aromatics have counterparts in most TRP subfamilies. The one in TM5 (F380L) aligns precisely with an exceptional Drosophila mutant allele (F550I) that causes constitutive activity in the canonical TRP channel, resulting in rapid and severe retinal degeneration beyond mere loss of phototaxis. Thus, this phenylalanine maintains the balance of various functional states (conformations) of a channel for insect phototransduction as well as one for fungal mechanotransduction. This residue is among a small cluster of phenylalanines found in all known subfamilies of TRP channels. This unique case illustrates that GOF mutations can reveal structure-function principles that can be generalized across different TRP subfamilies. It appears that the conserved aromatics in the four locations have conserved functions in most TRP channels. The possible mechanistic roles of these aromatics and the further use of yeast genetics to dissect TRP channels are discussed.

MeSH Terms
Amino Acid Sequence Amino Acids, Aromatic/chemistry Conserved Sequence Fungal Proteins/chemistry,genetics,physiology Molecular Sequence Data Mutation Patch-Clamp Techniques Structure-Activity Relationship Transient Receptor Potential Channels/chemistry,genetics,physiology Yeasts/genetics,metabolism
Chemicals
Amino Acids, Aromatic Fungal Proteins Transient Receptor Potential Channels
Authors & Affiliations
7 authors, click to expand affiliations / ORCID
Su Zhenwei
Laboratory of Molecular Biology and Department of Genetics, University of Wisconsin, Madison, WI 53706, USA.
Zhou Xinliang
Haynes W John
Loukin Stephen H
Anishkin Andriy
Saimi Yoshiro
Kung Ching
References (39)
39 references, click to expand
  1. Yeast respond to hypotonic shock with a calcium pulse.
    J Biol Chem. 1996 Sep 20;271(38):23357-62 PMID: 8798538
  2. Voltage sensor of Kv1.2: structural basis of electromechanical coupling.
    Science. 2005 Aug 5;309(5736):903-8 PMID: 16002579
  3. Yeast screen for constitutively active mutant G protein-activated potassium channels.
    Neuron. 2001 Mar;29(3):657-67 PMID: 11301025
  4. Rescue of the Drosophila phototransduction mutation trp by germline transformation.
    Science. 1985 Nov 29;230(4729):1040-3 PMID: 3933112
  5. The mec-4 gene is a member of a family of Caenorhabditis elegans genes that can mutate to induce neuronal degeneration.
    Nature. 1991 Feb 14;349(6310):588-93 PMID: 1672038
  6. OSM-9, a novel protein with structural similarity to channels, is required for olfaction, mechanosensation, and olfactory adaptation in Caenorhabditis elegans.
    J Neurosci. 1997 Nov 1;17(21):8259-69 PMID: 9334401
  7. Abnormal electroretinogram from a Drosophila mutant.
    Nature. 1969 Oct 18;224(5216):285-7 PMID: 5344615
  8. One face of a transmembrane helix is crucial in mechanosensitive channel gating.
    Proc Natl Acad Sci U S A. 1998 Sep 15;95(19):11471-5 PMID: 9736761
  9. TRP channels as cellular sensors.
    Nature. 2003 Dec 4;426(6966):517-24 PMID: 14654832
  10. Induction of photoreceptor voltage noise in the dark in Drosophila mutant.
    Nature. 1975 Nov 6;258(5530):84-7 PMID: 810728
  11. The transient receptor potential channel on the yeast vacuole is mechanosensitive.
    Proc Natl Acad Sci U S A. 2003 Jun 10;100(12):7105-10 PMID: 12771382
  12. A TRP homolog in Saccharomyces cerevisiae forms an intracellular Ca(2+)-permeable channel in the yeast vacuolar membrane.
    Proc Natl Acad Sci U S A. 2001 Jul 3;98(14):7801-5 PMID: 11427713
  13. Identification of the cystic fibrosis gene: genetic analysis.
    Science. 1989 Sep 8;245(4922):1073-80 PMID: 2570460
  14. Dissecting independent channel and scaffolding roles of the Drosophila transient receptor potential channel.
    J Cell Biol. 2005 Nov 21;171(4):685-94 PMID: 16301334
  15. Functional analysis of capsaicin receptor (vanilloid receptor subtype 1) multimerization and agonist responsiveness using a dominant negative mutation.
    J Neurosci. 2001 Nov 15;21(22):8697-706 PMID: 11698581
  16. Crystal structure of a Kir3.1-prokaryotic Kir channel chimera.
    EMBO J. 2007 Sep 5;26(17):4005-15 PMID: 17703190
  17. Single amino acid change in the fifth transmembrane segment of the TRP Ca2+ channel causes massive degeneration of photoreceptors.
    J Biol Chem. 2002 Sep 13;277(37):33884-9 PMID: 12107168
  18. Heterologously expressed fungal transient receptor potential channels retain mechanosensitivity in vitro and osmotic response in vivo.
    Eur Biophys J. 2005 Jul;34(5):413-22 PMID: 15711808
  19. Molecular mechanisms of conduction and selectivity in aquaporin water channels.
    J Nutr. 2007 Jun;137(6 Suppl 1):1509S-1515S; discussion 1516S-1517S PMID: 17513417
  20. Yeast screens show aromatic residues at the end of the sixth helix anchor transient receptor potential channel gate.
    Proc Natl Acad Sci U S A. 2007 Sep 25;104(39):15555-9 PMID: 17878311
  21. TopPred II: an improved software for membrane protein structure predictions.
    Comput Appl Biosci. 1994 Dec;10(6):685-6 PMID: 7704669
  22. An introduction to TRP channels.
    Annu Rev Physiol. 2006;68:619-47 PMID: 16460286
  23. Cloning of genomic and complementary DNA from Shaker, a putative potassium channel gene from Drosophila.
    Science. 1987 Aug 14;237(4816):749-53 PMID: 2441470
  24. Nonphototactic mutants in a study of vision of Drosophila.
    Nature. 1969 Apr 26;222(5191):351-4 PMID: 5782110
  25. A combined transmembrane topology and signal peptide prediction method.
    J Mol Biol. 2004 May 14;338(5):1027-36 PMID: 15111065
  26. Role of aromatic localization in the gating process of a potassium channel.
    Biophys J. 2006 Jan 1;90(1):L01-3 PMID: 16169989
  27. Properties of integral membrane protein structures: derivation of an implicit membrane potential.
    Proteins. 2005 May 1;59(2):252-65 PMID: 15723347
  28. The capsaicin receptor: a heat-activated ion channel in the pain pathway.
    Nature. 1997 Oct 23;389(6653):816-24 PMID: 9349813
  29. Interfacial positioning and stability of transmembrane peptides in lipid bilayers studied by combining hydrogen/deuterium exchange and mass spectrometry.
    J Biol Chem. 2001 Sep 14;276(37):34501-8 PMID: 11435420
  30. Random mutagenesis reveals a region important for gating of the yeast K+ channel Ykc1.
    EMBO J. 1997 Aug 15;16(16):4817-25 PMID: 9305624
  31. X-ray structure of a voltage-dependent K+ channel.
    Nature. 2003 May 1;423(6935):33-41 PMID: 12721618
  32. Internal Ca(2+) release in yeast is triggered by hypertonic shock and mediated by a TRP channel homologue.
    J Cell Biol. 2002 Jan 7;156(1):29-34 PMID: 11781332
  33. Polycystins and mechanosensation in renal and nodal cilia.
    Bioessays. 2004 Aug;26(8):844-56 PMID: 15273987
  34. Novel mechanism of massive photoreceptor degeneration caused by mutations in the trp gene of Drosophila.
    J Neurosci. 2000 Jan 15;20(2):649-59 PMID: 10632594
  35. Requirement of TRPC channels in netrin-1-induced chemotropic turning of nerve growth cones.
    Nature. 2005 Apr 14;434(7035):898-904 PMID: 15758951
  36. Electrostatic contributions to indole-lipid interactions.
    J Phys Chem B. 2005 Jul 7;109(26):13014-23 PMID: 16852615
  37. Hydrophobic interactions of peptides with membrane interfaces.
    Biochim Biophys Acta. 1998 Nov 10;1376(3):339-52 PMID: 9804985
  38. Gene interactions affecting mechanosensory transduction in Caenorhabditis elegans.
    Nature. 1994 Feb 3;367(6462):467-70 PMID: 7509039
  39. The structure of the potassium channel: molecular basis of K+ conduction and selectivity.
    Science. 1998 Apr 3;280(5360):69-77 PMID: 9525859
Article Info
Journal
Proceedings of the National Academy of Sciences of the United States of America
Abbr.
Proc Natl Acad Sci U S A
ISSN
1091-6490
Published
2007-12-04
Epub
2007-00-27
Pages
19607-12
Language
English
Region
United States
NLM ID
7505876
PMCID
PMC2148336
Subset
IM
Grants
NIGMS NIH HHS · R01 GM047856 · United States
NIGMS NIH HHS · R01 GM054867 · United States
NIGMS NIH HHS · GM054867 · United States
NIGMS NIH HHS · GM047856 · United States
Analysis Services
Analysis Services

Contact

No. 2 Wenbo Road, Zhangqiu District, Jinan, Shandong

Qilu Normal University · Genelibs Bioinformatics Lab

750 Shunhua Rd, Jinan

2F, Bldg F, University Science Park

Tel: 0531-88819269

WeChat Official Account

Follow our WeChat subscription account for real-time updates and the latest in medical and biological research.


Business Email

E-mail: product@genelibs.com